View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_64 (Length: 255)
Name: NF10110_2D_low_64
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 41967973 - 41968203
Alignment:
| Q |
9 |
gaaatgaaacaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccgga |
108 |
Q |
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| T |
41967973 |
gaaatgaaaaaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctgga |
41968072 |
T |
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| Q |
109 |
ggtacacacaagcatttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacatt |
208 |
Q |
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| T |
41968073 |
ggtacacacaagcatttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacatt |
41968172 |
T |
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| Q |
209 |
ctacaatttcaaccatgcaatattagttagt |
239 |
Q |
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| T |
41968173 |
ctacaatttcaaccatgcaatattagttagt |
41968203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 1234991 - 1235210
Alignment:
| Q |
19 |
aacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacaca |
118 |
Q |
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| T |
1234991 |
aacataattcaaggacattttggtcctccttctttagtcttccagtcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacaca |
1235090 |
T |
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| Q |
119 |
agcatttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttc |
218 |
Q |
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| T |
1235091 |
agcattttgcacaacaatacttgcaatagaacaaacatggttttctgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttc |
1235190 |
T |
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| Q |
219 |
aaccatgcaatattagttag |
238 |
Q |
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| T |
1235191 |
aaccatgcaatattaattag |
1235210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 35649515 - 35649673
Alignment:
| Q |
29 |
aaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcatttggc |
128 |
Q |
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|||| ||||| |||||||| |||||||||||| | ||| ||||| || ||||| | |||||| |||||| || ||||| |||||||| || ||||| |
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| T |
35649515 |
aagggcatttgggtcctccccttttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacacttggc |
35649614 |
T |
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| Q |
129 |
acaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctat |
187 |
Q |
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|||||| | |||||| |||| || ||||| || |||| ||||| ||||||||||||| |
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| T |
35649615 |
acaacacttgttgcaaaagaataagcatggcttcttgtattgtgtgtttgagcatctat |
35649673 |
T |
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