View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_7 (Length: 914)

Name: NF10110_2D_low_7
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_7
NF10110_2D_low_7
[»] chr5 (4 HSPs)
chr5 (102-629)||(4308466-4308983)
chr5 (699-892)||(4308213-4308396)
chr5 (274-361)||(4312551-4312638)
chr5 (284-361)||(30364366-30364443)
[»] chr7 (2 HSPs)
chr7 (276-358)||(6055065-6055147)
chr7 (284-358)||(48926625-48926699)
[»] chr1 (1 HSPs)
chr1 (275-361)||(42321472-42321558)
[»] chr8 (4 HSPs)
chr8 (275-356)||(20112825-20112906)
chr8 (275-358)||(9528899-9528982)
chr8 (284-361)||(35911182-35911259)
chr8 (284-357)||(35916268-35916341)
[»] chr4 (6 HSPs)
chr4 (284-361)||(41303623-41303700)
chr4 (284-358)||(38843710-38843784)
chr4 (284-357)||(52208007-52208080)
chr4 (284-358)||(27972657-27972731)
chr4 (284-358)||(38584093-38584167)
chr4 (284-357)||(37235943-37236016)
[»] chr3 (1 HSPs)
chr3 (284-358)||(26286775-26286849)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 102 - 629
Target Start/End: Complemental strand, 4308983 - 4308466
Alignment:
Q  102 tttgtaggggccataatcatatttaacattttttatttaaaaaataagaatgtaagtaaca---tttgtatgctttcttttcattccaaacaacagaaag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  4308983 tttgtaggggccataatcatatttaacattttttatttaaaaaataagaatgtaagtaacaacatttgtatgctttcttttcattccaaacaacagaaag 4308884  T
Q  199 ttagtgctatcccttctattctcc---------------caccttcacagttcaaccaaacaatgagtaaatctattatttaataaaatgaaaaaataac 283  Q
    ||||||||||||||||| ||||||               ||||||||||||||||||||||||||              | | |||||||||||||| |     
T  4308883 ttagtgctatcccttctcttctccaaatttctttcctcccaccttcacagttcaaccaaacaatg--------------taagtaaaatgaaaaaatgat 4308798  T
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgttgaaacataggtgtttgtaaaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  4308797 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgttaaagcataggtgtttgtaaaa 4308698  T
Q  384 gtcaaaaactaggccattaaaccaaaatgcatcaacaaaaattatga----taggtagcacacgaactgaagtgttagctcagttcaatttgtacactat 479  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4308697 ctcaaaaactaggccattaaactaaaatgcatcaacaaaaattgtgataggtaggtagcacacgaactgaagtgtttgctcagttcaatttgtacactat 4308598  T
Q  480 atatcatgattcagttcttttggttaaatttcattttagtataatgattcatttcaaagtttagannnnnnnnnnnaaccgtctcaaattcgattatttt 579  Q
    ||||||||||| ||||||||||||||||||                |||||||||||| ||||||           ||| ||||||||||||||||| ||    
T  4308597 atatcatgattaagttcttttggttaaatt----------------attcatttcaaactttaga--tttttttttaacggtctcaaattcgattatctt 4308516  T
Q  580 ggaggttagtttaggtggattggtttgacttattcaaacaaaattatgga 629  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||    
T  4308515 ggaggttagtttagttggactgatttgacttattcaaacaaaattatgga 4308466  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 699 - 892
Target Start/End: Complemental strand, 4308396 - 4308213
Alignment:
Q  699 gaaagaatttaaccatctagtttggtatgctttgatttagcagttcaattttctgtaaaggtagttctagtttagaaacatataatcaatgcaccaaacc 798  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  4308396 gaaagaatttaaccgtctagtttggtatgctttgattttgcagttcaattttctgtaaaggtagttctagt----------ataatcaatgcaccaaacc 4308307  T
Q  799 tttatacaagttcaattcaattttactgaactgtttcaattcacttcggttttcctttcgattcgattttccttattgaatcgaaccatgaacc 892  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4308306 tttattcaagttcaattcaattttaccgaactgtttcaattcacttcggttttcctttcgattcaattttccttattgaatcaaaccatgaacc 4308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 4312638 - 4312551
Alignment:
Q  274 aaaaaataacttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 361  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4312638 aaaaaatgatttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 4312551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 30364443 - 30364366
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30364443 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 30364366  T

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Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 6055147 - 6055065
Alignment:
Q  276 aaaataacttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6055147 aaaataatttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 6055065  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 48926699 - 48926625
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  48926699 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctaaccaactagactacaacggatt 48926625  T

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Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 42321558 - 42321472
Alignment:
Q  275 aaaaataacttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 361  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42321558 aaaaaaaatttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 42321472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 20112906 - 20112825
Alignment:
Q  275 aaaaataacttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacgga 356  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20112906 aaaaataaattccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacgga 20112825  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 9528899 - 9528982
Alignment:
Q  275 aaaaataacttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9528899 aaaaacaaattccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggatt 9528982  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 35911259 - 35911182
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 361  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35911259 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggacttgt 35911182  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 35916341 - 35916268
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggat 357  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  35916341 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggat 35916268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 41303623 - 41303700
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41303623 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatttgt 41303700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 38843710 - 38843784
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843710 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 38843784  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 52208080 - 52208007
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggat 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52208080 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggat 52208007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 27972657 - 27972731
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  27972657 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggatt 27972731  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 38584093 - 38584167
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38584093 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggatt 38584167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 37236016 - 37235943
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggat 357  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  37236016 ttccgttgccgggacttgaacccgggtctctcgggtgagagccgagtatcctgaccaactagactacaacggat 37235943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 26286849 - 26286775
Alignment:
Q  284 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26286849 ttccgttgccgggacttgaacccgggtctttcgggtgagagccgaatatcctgaccaactagactacaacggatt 26286775  T

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