View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_70 (Length: 217)
Name: NF10110_2D_low_70
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 3613424 - 3613305
Alignment:
| Q |
80 |
gagttttgatgcattagctctttcatccgatcatatggcattcgtgttatttgccaatatctcgtgatcagctcaggacgtggagtcgcacgacctgtag |
179 |
Q |
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| T |
3613424 |
gagttttgatgcattagctctttcatccgatcatatggcattcgtgttatttgccaatatctcgtgatcagctcaggacgtggagtcgcacgacctgtag |
3613325 |
T |
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| Q |
180 |
caggtgtgacaggattaatt |
199 |
Q |
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| T |
3613324 |
caggtgtgacaggattaatt |
3613305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 3613457 - 3613500
Alignment:
| Q |
4 |
catttgagtctgcacctgggacaactctgtttgctgactggggt |
47 |
Q |
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| T |
3613457 |
catttgagtctacacctgggacaactctgtttgctgactggggt |
3613500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 14757225 - 14757108
Alignment:
| Q |
82 |
gttttgatgcattagctctttcatccgatcatatggcattcgtgttatttgccaatatctcgtgatcagctcaggacgtggagtcgcacgacctgtagca |
181 |
Q |
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| T |
14757225 |
gttttgctgcatcagttctttcatccgatcatatggcattcgtgttatttgccaatatcgtgtgatcagctcaggacgcggattaacacgaactatagca |
14757126 |
T |
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| Q |
182 |
ggtgtgacaggattaatt |
199 |
Q |
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| T |
14757125 |
ggtgtgacaggattaatt |
14757108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 14757272 - 14757339
Alignment:
| Q |
16 |
cacctgggacaactctgtttgctgactggggtataggtcctgcacttggggtggctgatccaaagagt |
83 |
Q |
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| T |
14757272 |
cacctgggacaactctgtttgctgactggggtataggtcctgctgttggagaggctgatccaaagagt |
14757339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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