View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10110_2D_low_72 (Length: 215)
Name: NF10110_2D_low_72
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_72 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0014 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3220152 - 3220348
Alignment:
| Q |
17 |
catcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220152 |
catcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactat |
3220251 |
T |
|
| Q |
117 |
tgccagctcagtcagtcacagtattgacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220252 |
tgccagctcagtcagtcacagtattgacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
3220348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 15985436 - 15985303
Alignment:
| Q |
17 |
catcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaa-ggtcgatccctcaaataagcaagtcctgtcctaagtgagacta |
115 |
Q |
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|||||||||||| ||||||||||||||||| |||| || || ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||| | |
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| T |
15985436 |
catcatatcatgcacctgataactcctctgatttgaactcttgaagtagtaatcaaaggttgatccctcaaataagcaagtcttgtcctaagtgtgacga |
15985337 |
T |
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| Q |
116 |
ttgccagctcagtcagtcacagtattgacaagtgattt |
153 |
Q |
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|||||||| |||| ||||||||||||||||||||| |
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| T |
15985336 |
ttgccagc----tcagccacagtattgacaagtgattt |
15985303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 12504720 - 12504778
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
12504720 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
12504778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 14681206 - 14681148
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
14681206 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
14681148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 23729278 - 23729406
Alignment:
| Q |
22 |
tatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgcca |
121 |
Q |
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||||||| ||||| | |||||| ||| ||||||| || ||| |||| ||| || |||| ||||||||||||||| |||||||||||| ||||||||||| |
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| T |
23729278 |
tatcatgcacctggtgactcctatgccttggtctcttacagtggtaaccaatgttgatctctcaaataagcaagttctgtcctaagtgtgactattgcca |
23729377 |
T |
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| Q |
122 |
gctcagtcagtcacagtattgacaagtgatttg |
154 |
Q |
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|||| | | |||||||||||||||||||||| |
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| T |
23729378 |
gctc-gac---cacagtattgacaagtgatttg |
23729406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 23929254 - 23929196
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
23929254 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
23929196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 44197897 - 44197955
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
44197897 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
44197955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 20793444 - 20793497
Alignment:
| Q |
162 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
20793444 |
cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaa |
20793497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 143719 - 143777
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
143719 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
143777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 173513 - 173571
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
173513 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
173571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 48513721 - 48513663
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
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|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
48513721 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
48513663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 48728163 - 48728105
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
48728163 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
48728105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 29651774 - 29651832
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
29651774 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
29651832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 36662526 - 36662584
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
36662526 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
36662584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 36679252 - 36679194
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36679252 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
36679194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 23204100 - 23204042
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
23204100 |
aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaa |
23204042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 38327980 - 38327922
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38327980 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
38327922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 46073352 - 46073410
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46073352 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
46073410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 55488644 - 55488702
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
55488644 |
aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaa |
55488702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 52609299 - 52609241
Alignment:
| Q |
157 |
aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52609299 |
aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
52609241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 29886958 - 29887011
Alignment:
| Q |
162 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29886958 |
cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
29887011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 52887707 - 52887760
Alignment:
| Q |
162 |
cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaa |
215 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52887707 |
cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaa |
52887760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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