View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_9 (Length: 825)

Name: NF10110_2D_low_9
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_9
NF10110_2D_low_9
[»] chr8 (8 HSPs)
chr8 (17-678)||(5252240-5252901)
chr8 (686-806)||(5252927-5253047)
chr8 (346-465)||(1010762-1010881)
chr8 (400-465)||(25108960-25109025)
chr8 (369-452)||(39920681-39920764)
chr8 (346-460)||(29978016-29978130)
chr8 (367-468)||(3774822-3774923)
chr8 (406-455)||(24425549-24425598)
[»] chr5 (7 HSPs)
chr5 (489-672)||(28455872-28456056)
chr5 (385-437)||(4634813-4634865)
chr5 (406-465)||(21823892-21823951)
chr5 (401-460)||(27529695-27529754)
chr5 (406-460)||(43463677-43463731)
chr5 (400-437)||(20427506-20427543)
chr5 (558-647)||(35122147-35122236)
[»] chr3 (9 HSPs)
chr3 (308-460)||(29807377-29807529)
chr3 (375-456)||(25049760-25049841)
chr3 (534-647)||(29807574-29807687)
chr3 (502-618)||(25050415-25050531)
chr3 (375-465)||(30827831-30827921)
chr3 (401-460)||(53504506-53504565)
chr3 (389-452)||(15205001-15205064)
chr3 (355-464)||(21735013-21735122)
chr3 (547-624)||(28624371-28624448)
[»] chr7 (10 HSPs)
chr7 (351-648)||(22079171-22079470)
chr7 (345-465)||(38430346-38430466)
chr7 (406-460)||(12463672-12463726)
chr7 (389-460)||(7288149-7288220)
chr7 (394-460)||(20367904-20367970)
chr7 (401-458)||(8751130-8751187)
chr7 (360-460)||(9601550-9601650)
chr7 (360-460)||(9829121-9829221)
chr7 (582-621)||(4959826-4959865)
chr7 (388-453)||(3942860-3942925)
[»] chr4 (8 HSPs)
chr4 (486-621)||(16698812-16698947)
chr4 (389-460)||(22196285-22196356)
chr4 (345-460)||(51071939-51072054)
chr4 (317-460)||(16698637-16698780)
chr4 (416-461)||(10358396-10358441)
chr4 (406-455)||(18871038-18871087)
chr4 (400-460)||(46610680-46610740)
chr4 (406-460)||(5320261-5320315)
[»] chr1 (6 HSPs)
chr1 (346-465)||(15174509-15174628)
chr1 (388-460)||(50817224-50817296)
chr1 (410-460)||(43914155-43914205)
chr1 (409-458)||(41806017-41806066)
chr1 (401-460)||(14975970-14976029)
chr1 (385-455)||(751626-751696)
[»] scaffold0309 (1 HSPs)
scaffold0309 (345-455)||(507-617)
[»] chr2 (7 HSPs)
chr2 (401-460)||(33036329-33036388)
chr2 (389-460)||(5664009-5664080)
chr2 (401-460)||(26245830-26245889)
chr2 (401-460)||(45717955-45718014)
chr2 (389-455)||(45469530-45469596)
chr2 (389-455)||(45702555-45702621)
chr2 (547-596)||(2467640-2467689)
[»] chr6 (10 HSPs)
chr6 (400-465)||(15171446-15171511)
chr6 (400-465)||(15180218-15180283)
chr6 (493-626)||(10747858-10747990)
chr6 (400-465)||(15471902-15471967)
chr6 (401-460)||(12334903-12334962)
chr6 (406-465)||(16478959-16479018)
chr6 (401-455)||(21606393-21606447)
chr6 (389-438)||(3298056-3298105)
chr6 (369-458)||(18488346-18488435)
chr6 (580-621)||(34702338-34702379)
[»] scaffold0155 (1 HSPs)
scaffold0155 (389-468)||(32960-33039)
[»] scaffold0533 (1 HSPs)
scaffold0533 (400-465)||(739-804)


Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 678
Target Start/End: Original strand, 5252240 - 5252901
Alignment:
Q  17 attattctagtagattattattgtgtcaaaataattaaaatatttctaacattatattactgtatcaaattgctattatcatatatttgataatacaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252240 attattctagtagattattattgtgtcaaaataattaaaatatttctaacagtatattactgtatcaaattgctattatcatatatttgataatacaaca 5252339  T
Q  117 acaaatacttgtggtgctttgaaccctcatcaaaggatgcgtccatannnnnnnnggttacatcataaaaattattatgaataaagataacctacttctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||    
T  5252340 acaaatacttgtggtgctttgaaccctcatcaaaggatgcgtccatattttttttggttacatcataaaaaatattatgaataaagataacctacttctt 5252439  T
Q  217 aacctttatacatattgcaagacttgtagtatttcctttatgtattcgggtatttcaattggcggggattgtcattgtttaggcttctggaaccctctct 316  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5252440 aacctttatccatattgcaagacttatagtatttcctttatgtattcgggtatttcaattggcggggattgtcattgtttaggcttctggaaccctctcc 5252539  T
Q  317 ttgatcgcattaatttgaggttgttaagttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgat 416  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  5252540 ttgatcgcattaatttgaggttgtctagttggaaaagcaagtatatttcatttggtgatcgtccgatccttttgaagtttgtcatgtattctctttcgat 5252639  T
Q  417 ttactttcttttcttcttcaaagcccccacaggtataatctcttatatcaaaacttaaaatannnnnnnggggggatgtgagaattttagcaaaatatct 516  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  5252640 ttactttctttccttcttcaaagcccccacaggtataatctcttatatcaaaacttaaaatatttttttggggggatgtgagaattttagcaaaatatct 5252739  T
Q  517 tgggtgaattaagattctgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtcattactaaataaatggtgtt 616  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||    
T  5252740 tgggtgaattaagattctgtatgtcggagtaaggaggatgaatggttaggtgttagaaggttgagggagtttaacttgtcattattagataaatggtatt 5252839  T
Q  617 ggaggatgttagtttataaagacggattgtgtataatgtgttgaaggctcattatgagaaac 678  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5252840 ggaggatgttagtttataaagacgggttgtgtataatgtgttgaaggctcattatgagaaac 5252901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 686 - 806
Target Start/End: Original strand, 5252927 - 5253047
Alignment:
Q  686 aggctaggttcagcttggtggaatgtgactaataactactgtaataaataatttgaccccaaagttaaattcactttgtgataaataccgctaactcaat 785  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252927 aggctaggttcagcttggtggaatgtaactaataactactgtaataaaaaatttgaccccaaagttaaattcactttgtgataaataccgctaactcaat 5253026  T
Q  786 aattgagttaattgatcctat 806  Q
    |||| ||||||||||||||||    
T  5253027 aattaagttaattgatcctat 5253047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 346 - 465
Target Start/End: Complemental strand, 1010881 - 1010762
Alignment:
Q  346 tggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccca 445  Q
    |||||||| || | |||||| ||||||| ||| | |||||||||||| | ||| ||||| ||||||||| |||||||||||| ||||||||| ||||||     
T  1010881 tggaaaagtaaatttctttcgtttggtggtcgcctgatccttttgaaatctgtcatgtcatctcttccggtttactttctttccttcttcaaggcccccg 1010782  T
Q  446 caggtataatctcttatatc 465  Q
    ||  |||||| |||| ||||    
T  1010781 caaatataatttcttctatc 1010762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 25108960 - 25109025
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||||||||| |||||||||||| ||| |||||||||||  |||||||||| |||| ||||    
T  25108960 atgtcctctcttccggtttactttctttcctttttcaaagcccctgcaggtataatttcttctatc 25109025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 452
Target Start/End: Complemental strand, 39920764 - 39920681
Alignment:
Q  369 tggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtat 452  Q
    ||||| ||||| ||||||| |||||| |||  | || ||||||||| |||||||||||| ||||||||| || || ||||||||    
T  39920764 tggtggtcgtctgatccttctgaagtctgtcctatcatctcttccggtttactttctttccttcttcaaggcacctacaggtat 39920681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 29978130 - 29978016
Alignment:
Q  346 tggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccca 445  Q
    ||||||||||| | ||||||| |||||| || || ||| ||  |||| | ||| || || ||||||  ||||||||||||||||||||||||  | ||||    
T  29978130 tggaaaagcaaatttctttcaattggtggtcatctgattctcctgaaatatgtcatatcatctcttatgatttactttcttttcttcttcaagacaccca 29978031  T
Q  446 caggtataatctctt 460  Q
    || ||||||| ||||    
T  29978030 catgtataatttctt 29978016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 3774923 - 3774822
Alignment:
Q  367 tttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatca 466  Q
    ||||||| ||||| ||| || ||||| |||||  |||| || |||||  |||||||||||| ||| ||||| || ||| |||||||||| |||| |||||    
T  3774923 tttggtggtcgtctgatactattgaaatttgtcctgtcctcgcttccagtttactttctttcctttttcaaggctcccgcaggtataatttcttctatca 3774824  T
Q  467 aa 468  Q
    ||    
T  3774823 aa 3774822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 24425598 - 24425549
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    ||||||||| |||||||||||| ||||||||| || ||| ||||||||||    
T  24425598 tctcttccggtttactttctttccttcttcaaggctcccgcaggtataat 24425549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 489 - 672
Target Start/End: Complemental strand, 28456056 - 28455872
Alignment:
Q  489 gggatgtgagaattttagcaaaatatcttgggtgaattaagattctgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggagttt 588  Q
    |||| ||||| ||||||| ||||||||||||||||| || || ||||||||||  ||||| ||||||||||||| |||||| || ||| ||||||||||     
T  28456056 gggaggtgaggattttaggaaaatatcttgggtgaactaggactctgtttgtcgaagtaatgaggatgaagggtaaggtgtcaggaggctgagggagttc 28455957  T
Q  589 aacttgtcattactaaataaatggtgttggaggatgttagtttataaagacggattgtg-tataatgtgttgaaggctcattatg 672  Q
    |||||||| ||||||  ||||||||||||||||||||| ||| ||||||| || ||||| ||||  ||||||||| |||| ||||    
T  28455956 aacttgtcgttactaggtaaatggtgttggaggatgttggttgataaagatgggttgtgatatagggtgttgaagactcactatg 28455872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 4634813 - 4634865
Alignment:
Q  385 cttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaa 437  Q
    |||||||| ||||| ||||| ||| |||||||||||||||||| |||||||||    
T  4634813 cttttgaaatttgtcatgtcatctattccgatttactttctttccttcttcaa 4634865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 21823892 - 21823951
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||| |||||||||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  21823892 tctctcccggtttactttctttccttcttcaaggcccctacaggtatcatctcttctatc 21823951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 27529754 - 27529695
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||||||||||||||||||||||| | | ||||| || |||||| ||||||| ||||    
T  27529754 tgtcttctcttccgatttactttctttccgttttcaaggctcccacatgtataatttctt 27529695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 43463677 - 43463731
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||| |||| |||||||||||||||| ||||||||||| ||| ||||||| ||||    
T  43463677 tctcctccggtttactttcttttctttttcaaagcccctacatgtataatttctt 43463731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 437
Target Start/End: Original strand, 20427506 - 20427543
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaa 437  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  20427506 atgtcctctcttccgatttactttctttccttcttcaa 20427543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 647
Target Start/End: Original strand, 35122147 - 35122236
Alignment:
Q  558 agggttaggtgttagaaggttgagggagtttaacttgtcattactaaataaatggtgttggaggatgttagtttataaagacggattgtg 647  Q
    |||||| || ||||| ||||||||| |||||||  |  ||||||||   |||||||||||||||||||||||  ||| ||| ||||||||    
T  35122147 agggttgggggttaggaggttgaggaagtttaatgttgcattactagggaaatggtgttggaggatgttagtggatagagaaggattgtg 35122236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 308 - 460
Target Start/End: Original strand, 29807377 - 29807529
Alignment:
Q  308 accctctctttgatcgcattaatttgaggttgttaagttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttc 407  Q
    |||||||| |||| |||||||||||||||||||  ||||| ||||||||| |||||||||| ||||  |||  ||||||| |||||||||| |||| |||    
T  29807377 accctctccttgaacgcattaatttgaggttgtctagttgaaaaagcaagaatctttcattcggtggacgtatgatccttctgaagtttgtcatgttttc 29807476  T
Q  408 tcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||  | |||||||||||| ||||||||| |||||||||  |||||| ||||    
T  29807477 tcttttggtttactttctttccttcttcaaggcccccacaattataatatctt 29807529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 25049760 - 25049841
Alignment:
Q  375 tcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatc 456  Q
    ||||| ||||||| |||||||||| ||||||||||| ||| |||||||||||| ||||||||| || |||||||||||||||    
T  25049760 tcgtctgatccttctgaagtttgtcatgtcttctctcccggtttactttctttccttcttcaaggcgcccacaggtataatc 25049841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 534 - 647
Target Start/End: Original strand, 29807574 - 29807687
Alignment:
Q  534 tgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtcattactaaataaatggtgttggaggatgttagtttat 633  Q
    |||||||| |||||||||||||| |||||||||||| |  ||  |||||||| | |||||||  ||||||  ||||||||||||||||||||  ||| ||    
T  29807574 tgtttgtcggagtaaggaggatggagggttaggtgtcacgagtatgagggagctcaacttgttgttactatgtaaatggtgttggaggatgtcggttgat 29807673  T
Q  634 aaagacggattgtg 647  Q
    ||||||||||||||    
T  29807674 aaagacggattgtg 29807687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 618
Target Start/End: Original strand, 25050415 - 25050531
Alignment:
Q  502 tttagcaaaatatcttgggtgaattaagattctgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtcattac 601  Q
    ||||| |||||||||||||| || |  ||||| ||||| ||||||||||| |||  |||||||||||| || |||||| ||||||||||| |||| ||||    
T  25050415 tttaggaaaatatcttgggtaaactgggattcagtttgccagagtaaggatgatagagggttaggtgtcaggaggttgcgggagtttaacctgtcgttac 25050514  T
Q  602 taaataaatggtgttgg 618  Q
    ||  |||||||||||||    
T  25050515 taggtaaatggtgttgg 25050531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 375 - 465
Target Start/End: Original strand, 30827831 - 30827921
Alignment:
Q  375 tcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| |||||| ||||| ||||| |||||||| ||| ||||||||||||||| ||||||||  |||||| |||||||||| |||| ||||    
T  30827831 tcgtctgatcctcttgaaatttgtcatgtcttcgctttcgatttactttctttccttcttcagggcccccgcaggtataatttcttctatc 30827921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 53504506 - 53504565
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||||||||||||| |||||||||||| ||| |||||||| || ||||||||||| ||||    
T  53504506 tgtcttctcttccggtttactttctttcctttttcaaagctcctacaggtataatttctt 53504565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 15205001 - 15205064
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtat 452  Q
    |||||| ||| ||||| ||||||| |||||||||||||| ||| |||||||||||  |||||||    
T  15205001 tgaagtctgtcatgtcctctcttctgatttactttctttcctttttcaaagcccctgcaggtat 15205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 464
Target Start/End: Original strand, 21735013 - 21735122
Alignment:
Q  355 aagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataa 454  Q
    |||| ||||||||||||||  |||  | | ||| ||| || |||| |||| | ||||||| |||||||||||| ||| |||||||||||  |||||||||    
T  21735013 aagtttctttcatttggtggccgtttggttcttctgatgtctgttttgtcctgtcttccggtttactttctttcctttttcaaagcccctgcaggtataa 21735112  T
Q  455 tctcttatat 464  Q
    | || |||||    
T  21735113 tttcctatat 21735122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 624
Target Start/End: Complemental strand, 28624448 - 28624371
Alignment:
Q  547 aaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtcattactaaataaatggtgttggaggatg 624  Q
    |||||||| | |||||||||||||||||||||| | || ||||| || |||||| ||   || |||||||||||||||    
T  28624448 aaggaggaaggagggttaggtgttagaaggttgcgtgaatttaatttttcattattagggaagtggtgttggaggatg 28624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 6e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 351 - 648
Target Start/End: Complemental strand, 22079470 - 22079171
Alignment:
Q  351 aagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggt 450  Q
    ||||||| |||||||||| | || ||||| ||||||  |||||| ||| ||||||||||| ||| |||||||| |||  |||||||| |||||||||  |    
T  22079470 aagcaagaatctttcattcgatggtcgtctgatcctgctgaagtctgtcatgtcttctctcccggtttactttatttcattcttcaaggcccccaca--t 22079373  T
Q  451 ataatctcttatatcaaaac-----ttaaaata-nnnnnnnggggggatgtgagaattttagcaaaatatcttgggtgaattaagattctgtttgtcaga 544  Q
     ||||||||| ||||||| |     ||| || |        |||| |||||| | ||||||| ||||||| || ||||||||  ||  || ||| ||  |    
T  22079372 gtaatctcttctatcaaatctatttttataagatttattttggggagatgtggggattttaggaaaatattttaggtgaattggga--ctctttttcgaa 22079275  T
Q  545 gtaaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtcattactaaataaatggtgttggaggatgttagtttataaagacggatt 644  Q
    ||||||||||||||||||||||||| |  ||| | |||||||| |||||||| ||||||  ||||||||||||||||||||| ||| ||||||| || ||    
T  22079274 gtaaggaggatgaagggttaggtgtcatgaggctaagggagttcaacttgtcgttactaggtaaatggtgttggaggatgttggttgataaagaagggtt 22079175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 345 - 465
Target Start/End: Original strand, 38430346 - 38430466
Alignment:
Q  345 ttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccc 444  Q
    |||||||||||| | |||||| ||||||| ||||  ||| ||| | || | |||  |||| ||| ||||| |||||||||||| ||||||||| ||||||    
T  38430346 ttggaaaagcaaatttctttcgtttggtggtcgtttgattcttcttaaatctgtcttgtcctctgttccggtttactttctttccttcttcaaggccccc 38430445  T
Q  445 acaggtataatctcttatatc 465  Q
    ||||||||||| |||| ||||    
T  38430446 acaggtataatttcttctatc 38430466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 12463672 - 12463726
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||    
T  12463672 tctcttccgatttactttctttccttcttcaaggcccccgcaggtataatttctt 12463726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 389 - 460
Target Start/End: Complemental strand, 7288220 - 7288149
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||| ||||| ||||| ||||||| | |||||||||||| ||||||||| || |||||||||||||| ||||    
T  7288220 tgaaatttgtcatgtcgtctcttctggtttactttctttccttcttcaaggcacccacaggtataatttctt 7288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 460
Target Start/End: Complemental strand, 20367970 - 20367904
Alignment:
Q  394 tttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||||||| ||||||||  |||||||||||| ||||||||| |||| | |||||||||| ||||    
T  20367970 tttgttatgtcgtctcttccagtttactttctttccttcttcaaggccctcgcaggtataatttctt 20367904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 8751130 - 8751187
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctc 458  Q
    |||| ||||||||| |||||||||||| ||||||||| || || ||||||||||||||    
T  8751130 tgtcctctcttccggtttactttctttccttcttcaaggcgcctacaggtataatctc 8751187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 9601650 - 9601550
Alignment:
Q  360 tctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctctt-ccgatttactttcttttcttcttcaaagcccccacaggtataatctc 458  Q
    ||||||||||| || ||||| ||| ||| |||||| |||  |||||| |||| ||| |||||||||||| ||||||||| ||||| ||||||||||| ||    
T  9601650 tctttcatttgatggtcgtctgattcttctgaagtctgtcctgtctt-tcttgccggtttactttctttccttcttcaaggcccctacaggtataatttc 9601552  T
Q  459 tt 460  Q
    ||    
T  9601551 tt 9601550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 9829221 - 9829121
Alignment:
Q  360 tctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctctt-ccgatttactttcttttcttcttcaaagcccccacaggtataatctc 458  Q
    ||||||||||| || ||||| ||| ||| |||||| |||  |||||| |||| ||| |||||||||||| ||||||||| ||||| ||||||||||| ||    
T  9829221 tctttcatttgatggtcgtctgattcttctgaagtctgtcctgtctt-tcttgccggtttactttctttccttcttcaaggcccctacaggtataatttc 9829123  T
Q  459 tt 460  Q
    ||    
T  9829122 tt 9829121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 621
Target Start/End: Complemental strand, 4959865 - 4959826
Alignment:
Q  582 ggagtttaacttgtcattactaaataaatggtgttggagg 621  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  4959865 ggagtttaacttgtcattacttgataaatggtgttggagg 4959826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 3942925 - 3942860
Alignment:
Q  388 ttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtata 453  Q
    ||||| |||||  |||||||||||||| |||||||||||| ||| ||||| || |||||| |||||    
T  3942925 ttgaaatttgtcctgtcttctcttccggtttactttctttcctttttcaaggctcccacatgtata 3942860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 621
Target Start/End: Original strand, 16698812 - 16698947
Alignment:
Q  486 ggggggatgtgagaattttagcaaaatatcttgggtgaattaagattctgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggag 585  Q
    |||||| |||||| ||  ||| ||||| |||||||||||||  |||||||||||||| ||||| |||||||  |||||||| || || ||||| |||||     
T  16698812 ggggggttgtgaggatcataggaaaatctcttgggtgaattgggattctgtttgtcaaagtaaagaggatggtgggttaggcgtcaggaggttaagggaa 16698911  T
Q  586 tttaacttgtcattactaaataaatggtgttggagg 621  Q
    ||||| || |||||||||  ||||| ||| ||||||    
T  16698912 tttaatttatcattactaggtaaatcgtgctggagg 16698947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 460
Target Start/End: Original strand, 22196285 - 22196356
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||| ||||| ||||| ||||||||| |||||||||||| ||||||||| || |||||||||||||| ||||    
T  22196285 tgaaatttgtcatgtcgtctcttccggtttactttctttccttcttcaaggcacccacaggtataatttctt 22196356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 460
Target Start/End: Original strand, 51071939 - 51072054
Alignment:
Q  345 ttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccc 444  Q
    ||||||| |||| | |||||| ||||||| ||| | ||||||||| || | |||  || | ||||| ||| |||||||||||| ||||||||| ||||||    
T  51071939 ttggaaaggcaaatctctttcgtttggtggtcgcctgatccttttcaaatctgtcctgacatctctaccggtttactttctttccttcttcaaggccccc 51072038  T
Q  445 acaggtataatctctt 460  Q
    ||||||||||| ||||    
T  51072039 acaggtataatttctt 51072054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 460
Target Start/End: Original strand, 16698637 - 16698780
Alignment:
Q  317 ttgatcgcattaatttgaggttgttaagttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgat 416  Q
    ||||||||||||| |||| | ||   ||||||||||| ||| |||||||  | ||||  ||||  ||||||||||| | ||| ||||||||||||| | |    
T  16698637 ttgatcgcattaaattgaagatgactagttggaaaaggaagcatctttccctaggtggccgtctaatccttttgaaatctgtcatgtcttctcttctggt 16698736  T
Q  417 ttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
     |||||||||| ||||||||  || ||| || ||||||||||||    
T  16698737 ctactttctttccttcttcatggctccctcaagtataatctctt 16698780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 10358396 - 10358441
Alignment:
Q  416 tttactttcttttcttcttcaaagcccccacaggtataatctctta 461  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||    
T  10358396 tttactttctttccttcttcaaggcccccacaggtataatttctta 10358441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 18871087 - 18871038
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    |||||||||||||||||||||| ||||||||| || |||||| |||||||    
T  18871087 tctcttccgatttactttctttccttcttcaaggctcccacaagtataat 18871038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 46610740 - 46610680
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||||  ||||| |||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  46610740 atgtcttccattccggtttactttctttcctttttcaaagcccctacaggtataatttctt 46610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 5320261 - 5320315
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||||||||||||||||||||| ||||||||| || ||| || ||||||| ||||    
T  5320261 tctcttccgatttactttctttccttcttcaaggctcccgcatgtataatttctt 5320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 346 - 465
Target Start/End: Original strand, 15174509 - 15174628
Alignment:
Q  346 tggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccca 445  Q
    ||||||||||| | ||| || ||||||| ||||| ||  ||| |||| ||||| ||||| | ||| ||| |||||||||||| ||||||||| |||||||    
T  15174509 tggaaaagcaaatttctctcgtttggtggtcgtctgaatcttctgaaatttgtcatgtcatgtctaccggtttactttctttccttcttcaaggccccca 15174608  T
Q  446 caggtataatctcttatatc 465  Q
    |||||||||| |||| ||||    
T  15174609 caggtataatttcttctatc 15174628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 50817224 - 50817296
Alignment:
Q  388 ttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||| ||||| |||||||| |||||| |||||||||||| ||||||||| |||||| |||||||||| ||||    
T  50817224 ttgaaatttgtcatgtcttcgcttccggtttactttctttccttcttcaaggcccccgcaggtataatttctt 50817296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 43914205 - 43914155
Alignment:
Q  410 ttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||| ||||    
T  43914205 ttccggtttactttctttccttcttcaaggcccccacaggtataatttctt 43914155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 41806017 - 41806066
Alignment:
Q  409 cttccgatttactttcttttcttcttcaaagcccccacaggtataatctc 458  Q
    |||||| |||||||||||| ||| |||||||||||| |||||||||||||    
T  41806017 cttccggtttactttctttcctttttcaaagcccccgcaggtataatctc 41806066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 14975970 - 14976029
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||| || ||| ||| |||||||| ||||||||| |||||| |||||||||||||||    
T  14975970 tgtcttcgctcccggtttcctttctttccttcttcaaggcccccgcaggtataatctctt 14976029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 751696 - 751626
Alignment:
Q  385 cttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    |||||||| | ||||||||||||  || || |||||||||||| ||| ||||||| |||| ||||||||||    
T  751696 cttttgaaatctgttatgtcttccatttcggtttactttctttcctttttcaaagtccccgcaggtataat 751626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 507 - 617
Alignment:
Q  345 ttggaaaagcaagtatctttcatttggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagccccc 444  Q
    |||||||||||| | |||||| ||||||| ||| | ||||||  |||| | |||  |||| ||||| ||| |||||||||||| ||||||||| ||||||    
T  507 ttggaaaagcaaatctctttcgtttggtggtcgcctgatcctcctgaaatctgtcctgtcatctctaccggtttactttctttccttcttcaaggccccc 606  T
Q  445 acaggtataat 455  Q
    |||||||||||    
T  607 acaggtataat 617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 33036388 - 33036329
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||| ||||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||    
T  33036388 tgtcatctcttccggtttactttctttccttcttcaaggcccccacaggtataatttctt 33036329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 389 - 460
Target Start/End: Complemental strand, 5664080 - 5664009
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||||| ||| ||||| ||||||||| |||||||||||| ||| |||||||||||  |||||||||| ||||    
T  5664080 tgaagtctgtcatgtcctctcttccggtttactttctttcctttttcaaagcccctgcaggtataatttctt 5664009  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 26245830 - 26245889
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||| || ||| |||||||||||| ||||||||| |||||| |||||||||||||||    
T  26245830 tgtcttcgctcccggtttactttctttccttcttcaaggcccccgcaggtataatctctt 26245889  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 45718014 - 45717955
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    ||||||| || ||| |||||||||||| ||||||||| |||||| |||||||||||||||    
T  45718014 tgtcttcgctcccggtttactttctttccttcttcaaggcccccgcaggtataatctctt 45717955  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 45469596 - 45469530
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    |||||||| | ||||| ||||||||| |||||||||||| ||||||||| || || |||||||||||    
T  45469596 tgaagtttttcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggtataat 45469530  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 45702621 - 45702555
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    |||||| ||| ||||| ||||||||| |||||||||||| ||||||||| || || |||||||||||    
T  45702621 tgaagtctgtcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggtataat 45702555  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 596
Target Start/End: Original strand, 2467640 - 2467689
Alignment:
Q  547 aaggaggatgaagggttaggtgttagaaggttgagggagtttaacttgtc 596  Q
    ||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  2467640 aaggaggatgaagggttgggggttagaaggttgagagagtttaatttgtc 2467689  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 15171511 - 15171446
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||||||||| ||||||||||||| |||||||| ||||||||| ||||||| |||| ||||    
T  15171511 atgtcatctcttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatc 15171446  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 15180283 - 15180218
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||||||||| ||||||||||||| |||||||| ||||||||| ||||||| |||| ||||    
T  15180283 atgtcatctcttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatc 15180218  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 626
Target Start/End: Complemental strand, 10747990 - 10747858
Alignment:
Q  493 tgtgagaattttagcaaaatatcttgggtgaattaagattctgtttgtcagagtaaggaggatgaagggttaggtgttagaaggttgagggagtttaact 592  Q
    |||||| ||||||| ||||| |||||| ||||||  ||| |||| |||| |||||||||||| |  | ||||||||| |  |||||  | || ||||| |    
T  10747990 tgtgaggattttaggaaaatctcttggttgaattgggat-ctgtgtgtcggagtaaggaggaaggtgagttaggtgtcaacaggttacgagaatttaatt 10747892  T
Q  593 tgtcattactaaataaatggtgttggaggatgtt 626  Q
    | |||||| || ||||||||||||||||||||||    
T  10747891 tatcattattatataaatggtgttggaggatgtt 10747858  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 15471902 - 15471967
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| || |||||| ||||||||||||| |||||||| ||||||||| ||||||| |||| ||||    
T  15471902 atgtcatcccttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatc 15471967  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 12334903 - 12334962
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctctt 460  Q
    |||| ||||||||| |||||||||||| ||||||||| || |||| ||||||||| ||||    
T  12334903 tgtcgtctcttccggtttactttctttccttcttcaaggcacccataggtataatttctt 12334962  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 16479018 - 16478959
Alignment:
Q  406 tctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||| |||||||||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  16479018 tctctcccggtttactttctttccttcttcaaggcccctacaggtatcatctcttctatc 16478959  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 21606447 - 21606393
Alignment:
Q  401 tgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataat 455  Q
    |||| ||||||| | |||||||||||| ||| ||||||||||| |||||||||||    
T  21606447 tgtcctctcttcaggtttactttctttcctttttcaaagccccgacaggtataat 21606393  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 3298105 - 3298056
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaa 438  Q
    |||||||||| ||||| ||||||||| |||||||||||| ||| ||||||    
T  3298105 tgaagtttgtcatgtcctctcttccggtttactttctttcctttttcaaa 3298056  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 18488346 - 18488435
Alignment:
Q  369 tggtgatcgtccgatccttttgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctc 458  Q
    ||||| ||||| ||| ||| |||||| |||  | || ||||| ||| |||||||||||| ||||||||| ||||| |||||||| |||||    
T  18488346 tggtggtcgtctgattcttctgaagtctgtcctatcctctctcccggtttactttctttccttcttcaaggcccctacaggtatcatctc 18488435  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 34702338 - 34702379
Alignment:
Q  580 agggagtttaacttgtcattactaaataaatggtgttggagg 621  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  34702338 agggagtttaacttgtctttactacacaaatggtgttggagg 34702379  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 33039 - 32960
Alignment:
Q  389 tgaagtttgttatgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatcaaa 468  Q
    ||||||||||| |||| ||||||| |||||||||||||| ||||||||| || || ||| ||||||| || | |||||||    
T  33039 tgaagtttgttctgtcctctcttctgatttactttctttccttcttcaaggcacctacatgtataatttcctctatcaaa 32960  T

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Target: scaffold0533 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 804 - 739
Alignment:
Q  400 atgtcttctcttccgatttactttcttttcttcttcaaagcccccacaggtataatctcttatatc 465  Q
    ||||| ||||||||| |||||||||||||||||||||| | ||||||| || |||| |||| ||||    
T  804 atgtcatctcttccggtttactttcttttcttcttcaaggtccccacaagtttaatttcttctatc 739  T

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