View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_high_1 (Length: 943)
Name: NF10110_high_1
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 290 - 923
Target Start/End: Original strand, 35228045 - 35228678
Alignment:
| Q |
290 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
389 |
Q |
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| T |
35228045 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
35228144 |
T |
|
| Q |
390 |
tgtaccccatgaatttttcactagccaatacttcacaccatcatcactggtgccataaccaactatagtcactgtatgatctaaataaattccacatttt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
35228145 |
agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtaccataaccaactatagtaactgtatgatctaaatcaattccacatttt |
35228244 |
T |
|
| Q |
490 |
cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcaatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35228245 |
cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcgatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
35228344 |
T |
|
| Q |
590 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctttcctaacattgcatttaccatcaactcttgtataaggggaann |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
35228345 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctttcctaacattgcatttaccatcaacccttgtataagggtaatt |
35228444 |
T |
|
| Q |
690 |
nnnnncacttgttattcctccttttttaactatgaaatcacaagcatcttctacataaccaccattgcatccatcagttgtattagttttcacacaatcc |
789 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35228445 |
tgtttcacttgttattcctccttttttaactatgaaatcacaagcatcttctacataaccaccattgcatccatcagttgtattagttttgacacaatcc |
35228544 |
T |
|
| Q |
790 |
actagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctataa |
889 |
Q |
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| T |
35228545 |
actagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacagttgcaaatgcccaacaactacctataa |
35228644 |
T |
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| Q |
890 |
acaagaatcaacatcatcttaattagcataattt |
923 |
Q |
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| T |
35228645 |
acaagaatcaacatcatcttaattagcataattt |
35228678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 35227849 - 35227961
Alignment:
| Q |
20 |
agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagggaaacaaactcactcaattcatataattcatgagaaaaat |
119 |
Q |
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| T |
35227849 |
agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagtgaaacaaactcactcatttcatatcattcatgagaaaaat |
35227948 |
T |
|
| Q |
120 |
ctcaagtattaca |
132 |
Q |
| |
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||||||||||||| |
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| T |
35227949 |
ctcaagtattaca |
35227961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 35227963 - 35228046
Alignment:
| Q |
167 |
tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
250 |
Q |
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| T |
35227963 |
tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
35228046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 823 - 888
Target Start/End: Original strand, 31176914 - 31176979
Alignment:
| Q |
823 |
cctgtggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctata |
888 |
Q |
| |
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| T |
31176914 |
cctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
31176979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 29746586 - 29746533
Alignment:
| Q |
827 |
tggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaac |
880 |
Q |
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|||||||||| || |||||||||||||||||||| | | |||||||||||||| |
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| T |
29746586 |
tggttatttgttggataccttctattgcagccaccgtagaaaatgcccaacaac |
29746533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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