View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_high_17 (Length: 240)
Name: NF10110_high_17
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31716091 - 31716313
Alignment:
| Q |
1 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaaatatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31716091 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
31716190 |
T |
|
| Q |
101 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31716191 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
31716290 |
T |
|
| Q |
201 |
attcaccaatatgtggatgttta |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31716291 |
attcaccaatatgtggatgttta |
31716313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31721965 - 31722187
Alignment:
| Q |
1 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaaatatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721965 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
31722064 |
T |
|
| Q |
101 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722065 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
31722164 |
T |
|
| Q |
201 |
attcaccaatatgtggatgttta |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31722165 |
attcaccaatatgtggatgttta |
31722187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31723336 - 31723558
Alignment:
| Q |
1 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaaatatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
31723336 |
taaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgatacgtatgg |
31723435 |
T |
|
| Q |
101 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
200 |
Q |
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||||| |||| | ||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||| | ||| |
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| T |
31723436 |
tcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggatattgcagcatttcta |
31723535 |
T |
|
| Q |
201 |
attcaccaatatgtggatgttta |
223 |
Q |
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||||||||||||||| ||||||| |
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| T |
31723536 |
attcaccaatatgtgaatgttta |
31723558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31700783 - 31701005
Alignment:
| Q |
1 |
taaagaagaggtttattacacatggaacatcaaagatagttctcaaatatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| | || |||||||||||| ||||| |
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| T |
31700783 |
taaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgctacatatgg |
31700882 |
T |
|
| Q |
101 |
tcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggatattgtagcagtacta |
200 |
Q |
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|||||||||| ||||| ||||| | ||||||||| |||||| | |||| ||||||||| ||||||| |||||||||||||||||| || |||||||||| |
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| T |
31700883 |
tcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgaccactatggtctatgtggagtcaatggatactgcagcagtacta |
31700982 |
T |
|
| Q |
201 |
attcaccaatatgtggatgttta |
223 |
Q |
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||||||||| ||||| ||||||| |
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| T |
31700983 |
attcaccaacatgtgaatgttta |
31701005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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