View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_high_18 (Length: 225)
Name: NF10110_high_18
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 2217387 - 2217558
Alignment:
| Q |
45 |
aaatacaaccatatatttattatttgcagcccccaaacattattattaaataaataaa-------aaatacttaaaggggctagactaaaattcaagggt |
137 |
Q |
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| T |
2217387 |
aaatacaaccatatatttattatttgcagcccc-aaacattattattaaataaaaaaagaaaaaaaaatacttaaaggggctagactaaaattcaagggt |
2217485 |
T |
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| Q |
138 |
acaattccaagaaccacctcgttaaaaacctcaacatcaaaactccaaatggatcaaatttgatagcaaacaa |
210 |
Q |
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| T |
2217486 |
acaattccaagaaccacctcgttaaaaacctcaacatcaaaactccaaatggatcaaatttgatagcaaacaa |
2217558 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 2217318 - 2217368
Alignment:
| Q |
11 |
aagcaaaggcatcaaacgatggagatgacatcctaaatacaaccatatatt |
61 |
Q |
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| T |
2217318 |
aagcaaaggcatcaaatgatggagatgacatcctaaatacaaccttatatt |
2217368 |
T |
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