View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_high_3 (Length: 442)
Name: NF10110_high_3
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 12552523 - 12552303
Alignment:
| Q |
16 |
atatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattcccatcttgagaagctttt |
115 |
Q |
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| T |
12552523 |
atatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattcccatcttgagaagctttt |
12552424 |
T |
|
| Q |
116 |
tccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccacctacaagacaaatnnnnnnnntc |
215 |
Q |
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| T |
12552423 |
tccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccatctacaagacaaataaaaaaaatc |
12552324 |
T |
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| Q |
216 |
acattatttatagctctcgaa |
236 |
Q |
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||||||||||||||||||||| |
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| T |
12552323 |
acattatttatagctctcgaa |
12552303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 237 - 424
Target Start/End: Complemental strand, 12552231 - 12552042
Alignment:
| Q |
237 |
aaaattgacgtct--aacacttagtgatggaattagagacgaaattattttttccgtctgtgaaattccgtcgctatctttagagtgatttcaatatcat |
334 |
Q |
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| T |
12552231 |
aaaattgacgtctctaacacttagtgatggaattagagacgaaattattttttccgtctctgaaattccgtcgctatctttagagtgatttcaatatcat |
12552132 |
T |
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| Q |
335 |
tttctacataagaaaaaacaagttaagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtga |
424 |
Q |
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| T |
12552131 |
tttctacataagaaaaaacaagataagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatcagtga |
12552042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 42422618 - 42422690
Alignment:
| Q |
88 |
ggatcaattcccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttc |
160 |
Q |
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||||||||||||||||| | ||||||||| | |||| ||||||||||| |||||| ||||| || ||||||| |
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| T |
42422618 |
ggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgatttttaatctcattgtctgttc |
42422690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 50200020 - 50200060
Alignment:
| Q |
129 |
gttccaataattttttatctcgttatctgttcgtcctggta |
169 |
Q |
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| T |
50200020 |
gttccaataattttttatctcattatctgtacgtcctggta |
50200060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 27808608 - 27808566
Alignment:
| Q |
127 |
gtgttccaataattttttatctcgttatctgttcgtcctggta |
169 |
Q |
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| T |
27808608 |
gtgttccaataattctttatctcattatctgttcttcctggta |
27808566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 13344938 - 13344872
Alignment:
| Q |
129 |
gttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccaccta |
195 |
Q |
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| T |
13344938 |
gttccaatagttctttatctcattatctgttcgtcctggtaaatgtgatgctatcaccgaccaccta |
13344872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 45675811 - 45675867
Alignment:
| Q |
138 |
attttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccacct |
194 |
Q |
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| T |
45675811 |
attttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacct |
45675867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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