View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_high_6 (Length: 358)
Name: NF10110_high_6
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 53970283 - 53970626
Alignment:
| Q |
1 |
cgagttcaagatttatatcctttgtttcgcatcatactagtatttaagaaacaattgccagaaaacaatagtgactgagataactaaaatnnnnnnnnca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
53970283 |
cgagttcaagatttatatcctttgtttcgcatcatactagtatttaagaaacaattgccagaaaacgatagtgactgagataactaaaataaaaaaaaca |
53970382 |
T |
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| Q |
101 |
atcacaatgaaaaagaaaagtaaatgttgagaggagtggatctgaattacatcaaagccaatatataattccaaatctatatgacatagagttcatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53970383 |
atcacaatgaaaaagaaaagtaaatgttgagaggagtggatctgaattacatcaaagccaatatataattccaaatctatatgacatagagttcatgtct |
53970482 |
T |
|
| Q |
201 |
ttcaaacatcataaagtcttggtattttatatgtagaatataacaaaaaagccaggcatggaggaattatatacatcttagtcttcatcaatcaaatata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53970483 |
ttcaaacatcataaagtcttggtattttatatgtagaatataacaaaaaagccaggcatggaggaattatatacatcttagtcttcatcaatcaaatata |
53970582 |
T |
|
| Q |
301 |
agttcacatccccttgggcacactgataatttctgtaacatacg |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53970583 |
agttcacatccccttgggcacactgataatttctgtaacatacg |
53970626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 53060340 - 53060291
Alignment:
| Q |
292 |
tcaaatataagttcacatccccttgggcacactgataatttctgtaacat |
341 |
Q |
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||||||||||||| ||| |||||||| ||||| ||||||||||||||||| |
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| T |
53060340 |
tcaaatataagtttacagccccttggacacacagataatttctgtaacat |
53060291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 53063329 - 53063273
Alignment:
| Q |
285 |
tcatcaatcaaatataagttcacatccccttgggcacactgataatttctgtaacat |
341 |
Q |
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|||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
53063329 |
tcatcattcaaatataagtttacatccccttggatacagagataatttctgtaacat |
53063273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 53072370 - 53072314
Alignment:
| Q |
285 |
tcatcaatcaaatataagttcacatccccttgggcacactgataatttctgtaacat |
341 |
Q |
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|||||| ||||||||||||| |||||||||||| ||| ||| ||||||||||||| |
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| T |
53072370 |
tcatcattcaaatataagtttacatccccttggatacaaagatgatttctgtaacat |
53072314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 44253782 - 44253727
Alignment:
| Q |
279 |
tagtcttcatcaatcaaa-tataagttcacatccccttgggcacactgataatttc |
333 |
Q |
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|||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |
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| T |
44253782 |
tagtcttcatcaatcaaaatataagtttacagccccttgggcacacagataatttc |
44253727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 1061961 - 1062017
Alignment:
| Q |
285 |
tcatcaatcaaatataagttcacatccccttgggcacactgataatttctgtaacat |
341 |
Q |
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|||||||||||| || ||||||||| |||||||||||| ||||||| |||||||| |
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| T |
1061961 |
tcatcaatcaaacatgagttcacatgcccttgggcacaaatataatttatgtaacat |
1062017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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