View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_12 (Length: 306)
Name: NF10110_low_12
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 13026746 - 13026567
Alignment:
| Q |
19 |
cactagttggtgtatcttccctgacaactctcccatttcatagaagtcaaagaaataaaccattgtatctccctcctcgtttgaagtcgaatattgtgaa |
118 |
Q |
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| T |
13026746 |
cactagctggtgtatcttccttgacaactctcccatttcatagaagtcaaagaaataaaccattgtatctccctcctcgtttgaagtcgaatattgtgaa |
13026647 |
T |
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| Q |
119 |
cttgtagccaccgtaagactttatattagtcctaacttactcttacaaaatcggttggtgagagtatgaagaatgtaact |
198 |
Q |
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| T |
13026646 |
cttgtagccaccgtaagactttatattagtcctaacttactcttacaaaatcggttggtgagagtatgaagaatgtaact |
13026567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 13096930 - 13096751
Alignment:
| Q |
19 |
cactagttggtgtatcttccctgacaactctcccatttcatagaagtcaaagaaataaaccattgtatctccctcctcgtttgaagtcgaatattgtgaa |
118 |
Q |
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| T |
13096930 |
cactagctggtgtatcttccttgacaactctcccatttcatagaagtcaaagaaataaatcattgtatctctctcctcgtttgaagtcgaatattgtgaa |
13096831 |
T |
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| Q |
119 |
cttgtagccaccgtaagactttatattagtcctaacttactcttacaaaatcggttggtgagagtatgaagaatgtaact |
198 |
Q |
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| T |
13096830 |
cttgtagccaccgtaagactttatattagtcctaacttactcttacaaaatcggttggtgagagtatgaagaatgtaact |
13096751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 13024478 - 13024410
Alignment:
| Q |
220 |
acatctcattataaacattaatcataccttatcttttatcaatgtagcttggtgcgtgtatataaatgg |
288 |
Q |
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| T |
13024478 |
acatctcattataaacactaatcataccttatcttttatcaatgtagcttggtgcgtgtatataaatgg |
13024410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 13094662 - 13094596
Alignment:
| Q |
220 |
acatctcattataaacattaatcataccttatcttttatcaatgtagcttggtgcgtgtatataaat |
286 |
Q |
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| T |
13094662 |
acatctcattataaacactaatcataccttatcttttatcaatgtagcttggtgcgtgtatataaat |
13094596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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