View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_18 (Length: 261)
Name: NF10110_low_18
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 40718494 - 40718258
Alignment:
| Q |
17 |
caacaaattctgttgagctaagtttccgaagatggcaacgcccggagaagcggtaaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtacta |
116 |
Q |
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| T |
40718494 |
caacaaattctgttgagctaagtttccgaagatggcaacacccggagaagtggtaaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtacta |
40718395 |
T |
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| Q |
117 |
atgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatctgtctgatgtggtactatagcaaaggtttaattgttgag |
216 |
Q |
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| T |
40718394 |
atgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatatgtctgatgtggtactatagcaaaggtttaattgttgag |
40718295 |
T |
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| Q |
217 |
ttggatcatcaacacgctctagtttcacaggttctgc |
253 |
Q |
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| T |
40718294 |
ttggatcatcaacacgctctagtttcacagattctgc |
40718258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 14183683 - 14183510
Alignment:
| Q |
71 |
aaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaag |
170 |
Q |
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| T |
14183683 |
aaaagcaagacaaacaatgccatctgcaacatcaacaaatgtactaataggatgcaacttaacatccgcacctttaaaatgtgtcgttattataggaaaa |
14183584 |
T |
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| Q |
171 |
ttatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
244 |
Q |
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| T |
14183583 |
tcatatccatctgatgtgacgctatagcaaaggttaaataatcgggttggatcattaacacgcttcagtttcac |
14183510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 14192613 - 14192467
Alignment:
| Q |
91 |
catcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatctgtctgatgtggt |
190 |
Q |
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|||| ||||| |||||||| || ||||| |||||||| | | ||| ||||||||||||||| ||| |||| |||||| | ||||| || | | || |
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| T |
14192613 |
catcagcaaccgaaacaaatgtgctaataggatgcaaatcgacatctgcacctttaaaatgcattgtgattataggaaaatcatatccctcagctttgac |
14192514 |
T |
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| Q |
191 |
actatagcaaaggtttaattgttgagttggatcatcaacacgctcta |
237 |
Q |
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| T |
14192513 |
actatagcaaaggtttaatgtttgagtaggatcgtcaacacgttcta |
14192467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 14183755 - 14183716
Alignment:
| Q |
17 |
caacaaattctgttgagctaagtttccgaagatggcaacg |
56 |
Q |
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| T |
14183755 |
caacaaattctgctgagctaagtttccgaagatggaaacg |
14183716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 19648847 - 19648985
Alignment:
| Q |
106 |
caaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatctgtctgatgtggtactatagcaaaggtt |
205 |
Q |
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| T |
19648847 |
caaaggtactaattgggttcaacttaatatctgcacctttaaaatgtgcagtgattataggaaaatcatattggtctgatgtgatactataacaaaggtt |
19648946 |
T |
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| Q |
206 |
taattgttgagttggatcatcaacacgctctagtttcac |
244 |
Q |
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| T |
19648947 |
taatagttgattaggatcatcaacacgatctagtttcac |
19648985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 34666432 - 34666260
Alignment:
| Q |
72 |
aaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagt |
171 |
Q |
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||||||||||||||||| |||| | || | ||||||||||||||| | |||||||| |||||| |||||||||||||| || || |||| |||||| | |
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| T |
34666432 |
aaagcaaagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaatatcggcacctttaaaatgtgcggtgattataggaaaat |
34666333 |
T |
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| Q |
172 |
tatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
244 |
Q |
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| T |
34666332 |
catattcatttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcac |
34666260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 34646738 - 34646566
Alignment:
| Q |
72 |
aaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagt |
171 |
Q |
| |
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||||||||||||||||| |||| | || | ||||||||||||||| | |||||||| || ||| |||||||||||||| | || |||| |||||| | |
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| T |
34646738 |
aaagcaaagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaacatcggcacctttaaaatgtacggtgattataggaaaat |
34646639 |
T |
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| Q |
172 |
tatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
244 |
Q |
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| T |
34646638 |
catattcatttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcac |
34646566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 45645899 - 45645837
Alignment:
| Q |
107 |
aaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaa |
169 |
Q |
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|||||||||||| | |||||||| || ||| |||||||||||||| || || ||||||||||| |
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| T |
45645899 |
aaaggtactaatagaatgcaactcaacatcagcacctttaaaatgtgcggtgattagaggaaa |
45645837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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