View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_19 (Length: 253)
Name: NF10110_low_19
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_19 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 31715600 - 31715844
Alignment:
| Q |
9 |
agtgagatgaactgatgagcctaaaaatatctataataaagtattgcagaaaagtataaagagacatatattattttagaacttttggagcaccaatact |
108 |
Q |
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| T |
31715600 |
agtgagatgaactgatgagcctaaaaatatctataataaagtattgcagaaaagtataaagagacatatattattttagaacttttggagcaccaatact |
31715699 |
T |
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| Q |
109 |
tgtaaataggcatgatgtgttattcacaagtgtgtggtagagttcactctaagccactaccaactagtgtatgatatcgtgctgtgtctggttctatttt |
208 |
Q |
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| T |
31715700 |
tgtaaataggcatgatgtgttattcacaagtgtgtggtagagttcactctaagccactaccaactagtgtatgatatcgtgctgtgtctggttctatttt |
31715799 |
T |
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| Q |
209 |
ctgtttggataaacaatttaatttacttgtccctttcttaattcc |
253 |
Q |
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| T |
31715800 |
ctgtttggataaacaatttaatttacttgtccctttcttaattcc |
31715844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 31721469 - 31721718
Alignment:
| Q |
15 |
atgaactgatgagcctaaaaatatctataataaagtattgcagaaaagtataaagagacatatattattttagaacttttgg-------agcaccaatac |
107 |
Q |
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| T |
31721469 |
atgaactgaagagcctagcaatatctataataatgtaatgtagaaaagtaaaaataaacatatattattttagaactttaggctctccaatcaccaatac |
31721568 |
T |
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| Q |
108 |
ttgtaaataggcatgatgtgttattcaca----agtgtgtggtagagttcactctaagccactaccaactagtgtatgatatcgtgctgtgtctggttct |
203 |
Q |
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| T |
31721569 |
ttataaataggcatgatgtattatccacatgtgtgtgtgtggtagagttcactcgaagccactaccaactagtgtatgatattgtgttgtgtctggttct |
31721668 |
T |
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| Q |
204 |
attttctgtttggataaacaatttaatttacttgtccctttcttaattcc |
253 |
Q |
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| T |
31721669 |
attttctgtttggataaacaatttaatttacttgtccctttcttaattcc |
31721718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 253
Target Start/End: Original strand, 31700358 - 31700536
Alignment:
| Q |
56 |
agaaaagtataaagagacatatattattttagaacttttggagcaccaatacttgtaaataggcatgatgtgttattcacaagtgtgtggtagagttcac |
155 |
Q |
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| T |
31700358 |
agaaaagtataaagagacatat-------tagaacttttggagcaccaatacttataaataggcatgatgtgttattcacatgtgtgtggtcgagtt--- |
31700447 |
T |
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| Q |
156 |
tctaagccactaccaactagtgtatgatatcgtgctgtgtctggttctattttctgtttggataaacaatttaatttacttgtccctttcttaattcc |
253 |
Q |
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| T |
31700448 |
-------cactaacaactagtttatgatattatg--gtgtctgtttctattttctgtttggataaacaatttaatttacttgtccccttcttaattcc |
31700536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 31723050 - 31723089
Alignment:
| Q |
214 |
tggataaacaatttaatttacttgtccctttcttaattcc |
253 |
Q |
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| T |
31723050 |
tggataaacaatttaatttacttgtccctctcttaattcc |
31723089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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