View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_2 (Length: 697)
Name: NF10110_low_2
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Complemental strand, 5939689 - 5939031
Alignment:
| Q |
1 |
tcatcactatctaccacaaagataagaccttgtgtgttctgaaaatagtgtctccacaatggtcgaatctacacgaaatttagcatatactcgtattaga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939689 |
tcattactatctaccacaaagataagaccttgtgtgttctgaaaatagtgtctccacaatggtcgaatctacacgaaatttagcatatactcgtattaga |
5939590 |
T |
|
| Q |
101 |
gcagtctcagagtaacatacatgtgaatcatacaatgatacatagttgttagaacttattagaaggttgattaatattagttagcctcttaatttgtata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939589 |
gcagtctcagagtaacatacatgtgaatcatacaatgatacatagttgttagaacttattagaaggttgattaatattagttagcctcttaatttgtata |
5939490 |
T |
|
| Q |
201 |
aatatatacatattggcttgatcatcattcatagttcaatcaagtgaaagtgtgtattaccaatgtgcaaactgaattgcctcattgttgtgtatttctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939489 |
aatatatacatattggcttgatcatcattcatagttcaatcaagtgaaagtgtgtattaccaatgtgcaaactgaattgcctcattgttgtgtatttctg |
5939390 |
T |
|
| Q |
301 |
gtttgcaatttgaacatggaagctagaaaattacgaataataccttgtcttgtcctccaacatcccagacagtgaagctcacatttttgtactccacagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5939389 |
gtttgcaatttgaacatggaagctagaaaattacgaataataccttgtcttgtcctccaacatcccagacagtgaagctcacatttttgtactcaacagt |
5939290 |
T |
|
| Q |
401 |
ctctacattgaagcctgtttcatttgagacattagattatgtcaattttcaatcatttttcgcttagaatgatcataaggaacagnnnnnnntaaataga |
500 |
Q |
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| T |
5939289 |
ctctacattgaagcctggttcatttgagacattagattatgtcaattttcaatcatttttcgcttagaatgatcataaggaacagaaaaaaataaataga |
5939190 |
T |
|
| Q |
501 |
tattatttttcaatggactatttggaacctatggttggtatggtagtgacaatttctccaagcttcagtttgtagagtattgttgtttttccagcagcat |
600 |
Q |
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| T |
5939189 |
taatatttttcaatggactatttggaacctatggttggtatggtagtgacaatttctccaagcttcagtttgtagagtattgttgtttttccagcagcat |
5939090 |
T |
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| Q |
601 |
caagacctaccatcagaatcctcatttctttctttgcataaaataatctcattatccgt |
659 |
Q |
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| T |
5939089 |
caagacctaccatcagaatcctcatttctttctttgcataaaataatctcattatccgt |
5939031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 14761351 - 14761281
Alignment:
| Q |
342 |
accttgtcttgtcctccaacatcccagacagtgaagctcacatttttgtactccacagtctctacattgaa |
412 |
Q |
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| T |
14761351 |
accttgtcttggcctccaacatcccaaacggtgaagctaatgttcttgtactccacagtctcaacattgaa |
14761281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 634
Target Start/End: Complemental strand, 14765943 - 14765855
Alignment:
| Q |
546 |
gtgacaatttctccaagcttcagtttgtagagtattgttgtttttccagcagcatcaagacctaccatcagaatcctcatttctttctt |
634 |
Q |
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|||||||||||||||||||| || |||||||| || || || || ||||| ||||| ||||| ||||||||||| | |||||| ||||| |
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| T |
14765943 |
gtgacaatttctccaagcttgagcttgtagagaatggtggtcttaccagctgcatcgagaccaaccatcagaattcgcatttccttctt |
14765855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 14766736 - 14766663
Alignment:
| Q |
339 |
aataccttgtcttgtcctccaacatcccagacagtgaagctcacatttttgtactccacagtctctacattgaa |
412 |
Q |
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| T |
14766736 |
aataccttgtcctggcctccgacatcccaaacagtgaagctaatgttcttgtattccacagtctccacattgaa |
14766663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 38693566 - 38693495
Alignment:
| Q |
341 |
taccttgtcttgtcctccaacatcccagacagtgaagctcacatttttgtactccacagtctctacattgaa |
412 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| | || ||||| ||||| || || |||||||| |
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| T |
38693566 |
taccttgtcctgacctccaacatcccagacagtgaagctgatgttcttgtattccactgtttccacattgaa |
38693495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 634
Target Start/End: Complemental strand, 947269 - 947161
Alignment:
| Q |
526 |
aacctatggttggtatggtagtgacaatttctccaagcttcagtttgtagagtattgttgtttttccagcagcatcaagacctaccatcagaatcctcat |
625 |
Q |
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|||| ||||| || |||||||| || |||||||||||||||| ||| || | || || || || ||||| ||||| ||||||||||||| ||| ||||| |
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| T |
947269 |
aaccaatggtagggatggtagtaacgatttctccaagcttcaatttatacaaaatagtagtcttaccagccgcatcgagacctaccatcaaaattctcat |
947170 |
T |
|
| Q |
626 |
ttctttctt |
634 |
Q |
| |
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|| ||||| |
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|
| T |
947169 |
ctccttctt |
947161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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