View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_20 (Length: 253)
Name: NF10110_low_20
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30001640 - 30001897
Alignment:
| Q |
1 |
aataccgagttatcgtttggatgatgctaagcatgaatagttccaagaataat-actattttcttgttcaacaagtttataactagtaaagatgctaagt |
99 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| ||||| ||||| | ||||||||||| |
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| T |
30001640 |
aataccaagttatcgtttggatgatgctaagcttgaatagttccaagaataattactatgttcgtgttcatcaagtatataattggtaaagatgct---- |
30001735 |
T |
|
| Q |
100 |
atagtatgtctattaatgatgttttaatgtatatg-------------------ttgatagccaacatttgagtcttcatttggacatggaggtcaataa |
180 |
Q |
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||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30001736 |
-taggaggtctattaatgatgttttaatgtatattgcttgttctttatatatgtttgatagccaacatttgagtcttcattgggacatggaggtcaataa |
30001834 |
T |
|
| Q |
181 |
aatcacataccttcatgatcaatggtatggtgcaagtctatagtacaaatctccttcatctct |
243 |
Q |
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| T |
30001835 |
aatcacataccttcatgatcaatggtatggtgcaagtctatagtacaaatctccttcatctct |
30001897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 30007756 - 30007958
Alignment:
| Q |
1 |
aataccgagttatcgtttggatgatgctaagcatgaatagttccaagaataatactattttcttgttcaacaagtttata--actagtaaagatgctaag |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || | || ||||||||||||| |
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| T |
30007756 |
aataccgagttatcgtttggatgatgctaagcatgaatagttacaagaataatactatgttcttgttcaacaagtttctactagtaataaagatgctaag |
30007855 |
T |
|
| Q |
99 |
tatagtatgtctattaatgatgttttaatg------------------tatatgttgatagccaacatttgagtcttcatttggacatggaggtcaataa |
180 |
Q |
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| T |
30007856 |
tatggcaggtctattaatgatgttttaatgcatattgcttgttctttatatatgttcatagccaacatttgagtctccattgggacatggaggtcaataa |
30007955 |
T |
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| Q |
181 |
aat |
183 |
Q |
| |
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||| |
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| T |
30007956 |
aat |
30007958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30043242 - 30043124
Alignment:
| Q |
1 |
aataccgagttatcgtttggatgatgctaagcatgaatagttccaagaataatactattttcttgttcaacaagtttataactagtaaagatgctaagta |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||| |||||| |||| ||| || || ||||||||||| |||||||| |||| ||||| |
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| T |
30043242 |
aataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgtt---gtgtaacaagtttattgctagtaaaaatgccaagta |
30043146 |
T |
|
| Q |
101 |
tagtatgtctattaatgatgtt |
122 |
Q |
| |
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| ||| ||||| |||||||||| |
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| T |
30043145 |
ttgtacgtctagtaatgatgtt |
30043124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29995966 - 29996065
Alignment:
| Q |
1 |
aataccgagttatcgtttggatgatgctaagcatgaatagttccaagaataatactattttcttgttcaacaagtttataactagtaaagatgctaagta |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||| ||| | |||||||| || ||||||||||||| || |||||||| |||| ||||| |
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| T |
29995966 |
aataccaagttatcgtttggatgatgctaaacatgaatagttctaagtacaatactatgtt-gtgttcaacaagttaattgctagtaaaaatgccaagta |
29996064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30067759 - 30067644
Alignment:
| Q |
1 |
aataccgagttatcgtttggatgatgctaagcatgaatagttccaagaataatactattttcttgttcaacaagtttataactagtaaagatgctaagta |
100 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||| ||||||| |||||| || | | |||||||||||||||| |||||||| |||| ||||| |
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| T |
30067759 |
aataccaagttatcgtttggattatgctaagcataaatagtttcaagaacaa------tgttgtgttcaacaagtttattgctagtaaaaatgccaagta |
30067666 |
T |
|
| Q |
101 |
tagtatgtctattaatgatgtt |
122 |
Q |
| |
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||||| || || |||||||||| |
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|
| T |
30067665 |
tagtaggtttaataatgatgtt |
30067644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 30007974 - 30008007
Alignment:
| Q |
182 |
atcacataccttcatgatcaatggtatggtgcaa |
215 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
30007974 |
atcacatgccttcatgatcaatggtatggtgcaa |
30008007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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