View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_low_25 (Length: 241)

Name: NF10110_low_25
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_low_25
NF10110_low_25
[»] chr5 (1 HSPs)
chr5 (1-230)||(38073053-38073282)
[»] chr4 (2 HSPs)
chr4 (33-106)||(51888204-51888277)
chr4 (46-82)||(35182626-35182662)
[»] chr3 (3 HSPs)
chr3 (34-107)||(48199800-48199873)
chr3 (33-107)||(12947266-12947340)
chr3 (53-98)||(2352078-2352123)
[»] chr8 (1 HSPs)
chr8 (55-96)||(38505439-38505480)
[»] chr1 (2 HSPs)
chr1 (32-89)||(17119809-17119866)
chr1 (37-107)||(45789571-45789641)
[»] chr7 (1 HSPs)
chr7 (35-107)||(11343837-11343909)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38073053 - 38073282
Alignment:
Q  1 ctcgtcatcttgacgcaacattttttaatttccatcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||    
T  38073053 ctcgttatcttgacgcaacattttttaatttccatcttgttgtgttgtttgtttggtttagattgacatatcaacttcaatctattataaatttaattga 38073152  T
Q  101 tgatttgatcatcaacgtagtagatgttgagcatcactttgattttgtcactttatttctaggtattttgtcataaatcggtattgacnnnnnnntaaaa 200  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||    
T  38073153 tgatttgatcatcaacgtagtagatgtggagcatcgctttgattttgtcattttatttctaggtattttgtcataaatcggtattgataaaaaaataaaa 38073252  T
Q  201 gtgtgtcttttacccaacttgcaaattcat 230  Q
    ||||||||||||||| |||| |||||||||    
T  38073253 gtgtgtcttttaccctacttacaaattcat 38073282  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 51888277 - 51888204
Alignment:
Q  33 catcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcgatgattt 106  Q
    |||||||||| | |||| |||||||| ||||||| | ||||||||||||| || |||||||||||| |||||||    
T  51888277 catcttgttgcggtgttcgtttggttcatattgaaagatcaacttcaatcaatcacaaatttaatcaatgattt 51888204  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 35182662 - 35182626
Alignment:
Q  46 tgtttgtttggtttatattgacatatcaacttcaatc 82  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35182662 tgtttgtttggtttggattgacatatcaacttcaatc 35182626  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 48199800 - 48199873
Alignment:
Q  34 atcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcgatgatttg 107  Q
    ||||||||||| |||| ||||||||  |||||| | ||||||||||||| |||| |||||||||| ||||||||    
T  48199800 atcttgttgtggtgttcgtttggttcctattgaaagatcaacttcaatcaattataaatttaatcaatgatttg 48199873  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 12947340 - 12947266
Alignment:
Q  33 catcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcgatgatttg 107  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||||| || || | | ||| |||||||||||||    
T  12947340 catcttgttgtggtgttcgtttggttcatattgaaatatcaacttcagtcaatcatagattcaatcgatgatttg 12947266  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 2352123 - 2352078
Alignment:
Q  53 ttggtttatattgacatatcaacttcaatctattacaaatttaatc 98  Q
    |||||| | ||||||||||||||||||||| |||||||||| ||||    
T  2352123 ttggttcagattgacatatcaacttcaatcaattacaaattaaatc 2352078  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 38505480 - 38505439
Alignment:
Q  55 ggtttatattgacatatcaacttcaatctattacaaatttaa 96  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  38505480 ggtttagattgacatatcaacttcattctattacaaatttaa 38505439  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 17119866 - 17119809
Alignment:
Q  32 ccatcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattaca 89  Q
    ||||||||||||| ||||||||||||| | | |||||||||||||| |||| ||||||    
T  17119866 ccatcttgttgtgatgtttgtttggttcacaatgacatatcaactttaatcaattaca 17119809  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 45789571 - 45789641
Alignment:
Q  37 ttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcgatgatttg 107  Q
    |||||| | |||||||||||||  |||||| |||||||||| |||| |||||| ||| |||| ||||||||    
T  45789571 ttgttgcgatgtttgtttggttcctattgaaatatcaactttaatcaattacagattcaatcaatgatttg 45789641  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 11343837 - 11343909
Alignment:
Q  35 tcttgttgtgttgtttgtttggtttatattgacatatcaacttcaatctattacaaatttaatcgatgatttg 107  Q
    |||||||| | ||||||||||||| ||||||| | || || |||| || ||||||||||||||  ||||||||    
T  11343837 tcttgttgcggtgtttgtttggttcatattgaaagattaaattcagtcaattacaaatttaattaatgatttg 11343909  T

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