View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10110_low_3 (Length: 514)
Name: NF10110_low_3
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 232 - 504
Target Start/End: Original strand, 37643076 - 37643348
Alignment:
| Q |
232 |
tccacaaaataaaaattcaatatagcattgttttctaagttgcctacttccccaccaacatccttttttaaaatccacaggtaaaaattgtggtatacca |
331 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643076 |
tccataaaataaaaattcaatacagcattgttttctaagttgcctacttctccaccaacatccttttttaaaatccacaggtaaaaattgtggtatacca |
37643175 |
T |
|
| Q |
332 |
gacctgtttcctagctgacagctttcacatataaaactcttatcaatttttattttaagtggcgtaggactatagcttccatttgcatgctcaatctgac |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643176 |
gacctgtttcctagctgacagctttcacatataaaactcttatcaatttttattttaagtggcgtaggactatagcttccatttgcatgctcaatctgac |
37643275 |
T |
|
| Q |
432 |
tgacctgccattatatactcttcgcaactcaaactcgaagaacatgtagtcaagtcagatcacctcatttctt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643276 |
tgacctgccattatatactcttcgcaactcaaactcgaagaacatgtagtcaagtcagatcacctcatttctt |
37643348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 37642822 - 37643043
Alignment:
| Q |
18 |
caatgtagtcataccttctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37642822 |
caatgtagtcatacctgctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaa |
37642921 |
T |
|
| Q |
118 |
gatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgannnnnnnatttattttaaatcataatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37642922 |
gatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgatttttttatttattttaaatcataatg |
37643021 |
T |
|
| Q |
218 |
ttgggtaaggttcctccacaaa |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37643022 |
ttgggtaaggttcctccacaaa |
37643043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 19826242 - 19826375
Alignment:
| Q |
93 |
gcttcctattgatctaatacttgaagatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgann |
192 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||| |||||| |||| || || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
19826242 |
gcttccaattgatcttatacttgaagatgctttggacggagggcatgtagcaactttcagcgcaattgaaatgattactggtatgaatgtatgattgatt |
19826341 |
T |
|
| Q |
193 |
nnnnnatttattttaaatcataatgttgggtaag |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19826342 |
tttttatttattttaaatcataatgttgggtaag |
19826375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 6381493 - 6381664
Alignment:
| Q |
19 |
aatgtagtcataccttctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaag |
118 |
Q |
| |
|
||||||||||||||| ||| | | || |||||||||| |||||||||| | |||| |||||||||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
6381493 |
aatgtagtcatacctgctgctgcacagatagcttttgctggtcaatgttatggtaatagttggtcttcactttggcttcctattgatcttattcttgaag |
6381592 |
T |
|
| Q |
119 |
atgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattga |
190 |
Q |
| |
|
|||||||||| ||| || || |||||| ||| ||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
6381593 |
atgctttggacggaaggaacatagcagattttagtgccattgaaattattactggtatgaatctatcattga |
6381664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 44171171 - 44171243
Alignment:
| Q |
403 |
atagcttccatttgcatgctcaatctgactgacctgccattatatactcttcgcaactcaaactcgaagaaca |
475 |
Q |
| |
|
|||||||||| |||||| || |||| || |||| ||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
44171171 |
atagcttccacttgcatactaaatcacacggaccagccgttacatattcttcgcaactcaaactcgaagaaca |
44171243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 44191467 - 44191539
Alignment:
| Q |
403 |
atagcttccatttgcatgctcaatctgactgacctgccattatatactcttcgcaactcaaactcgaagaaca |
475 |
Q |
| |
|
|||||||||| |||||| || |||| || |||| ||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
44191467 |
atagcttccacttgcatactaaatcacacggaccagccgttacatattcttcgcaactcaaactcgaagaaca |
44191539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University