View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_low_30 (Length: 227)

Name: NF10110_low_30
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_low_30
NF10110_low_30
[»] chr5 (10 HSPs)
chr5 (56-216)||(33505071-33505231)
chr5 (1-46)||(7918430-7918475)
chr5 (1-45)||(31074302-31074346)
chr5 (1-45)||(37258328-37258372)
chr5 (1-43)||(34984876-34984918)
chr5 (1-42)||(18595966-18596007)
chr5 (1-36)||(14285231-14285266)
chr5 (1-42)||(18974030-18974071)
chr5 (1-46)||(21589358-21589403)
chr5 (1-46)||(25627127-25627171)
[»] chr3 (9 HSPs)
chr3 (1-46)||(10969878-10969923)
chr3 (1-46)||(30311376-30311421)
chr3 (1-45)||(28703366-28703410)
chr3 (3-46)||(46518700-46518743)
chr3 (5-46)||(7975499-7975540)
chr3 (1-45)||(15048023-15048067)
chr3 (4-39)||(53413018-53413053)
chr3 (1-46)||(16354855-16354898)
chr3 (4-46)||(26505322-26505364)
[»] chr6 (11 HSPs)
chr6 (1-46)||(11306135-11306180)
chr6 (1-46)||(12188264-12188309)
chr6 (8-46)||(23910074-23910112)
chr6 (1-45)||(9583435-9583479)
chr6 (1-45)||(13330157-13330201)
chr6 (5-41)||(19637965-19638001)
chr6 (1-46)||(1056646-1056691)
chr6 (4-45)||(3925817-3925858)
chr6 (4-45)||(15951264-15951305)
chr6 (1-46)||(24256783-24256828)
chr6 (1-45)||(32250812-32250856)
[»] chr4 (18 HSPs)
chr4 (1-46)||(15180808-15180853)
chr4 (1-45)||(19680750-19680794)
chr4 (3-46)||(4249249-4249292)
chr4 (1-46)||(6666387-6666432)
chr4 (1-46)||(7292759-7292804)
chr4 (1-46)||(37109312-37109357)
chr4 (1-46)||(38869838-38869883)
chr4 (3-42)||(52880214-52880253)
chr4 (1-46)||(23378026-23378071)
chr4 (1-46)||(50483075-50483120)
chr4 (1-45)||(2184994-2185038)
chr4 (1-45)||(33632098-33632142)
chr4 (4-46)||(1730450-1730492)
chr4 (8-46)||(16581770-16581808)
chr4 (1-46)||(12793872-12793917)
chr4 (1-46)||(37274420-37274465)
chr4 (4-45)||(44194946-44194987)
chr4 (1-45)||(20770981-20771025)
[»] chr1 (18 HSPs)
chr1 (1-46)||(2799932-2799977)
chr1 (1-46)||(8177143-8177188)
chr1 (1-46)||(29753719-29753764)
chr1 (1-45)||(3679276-3679320)
chr1 (1-45)||(33700735-33700779)
chr1 (1-46)||(40810537-40810582)
chr1 (1-45)||(35700024-35700068)
chr1 (1-45)||(36371540-36371584)
chr1 (1-43)||(8904484-8904526)
chr1 (1-39)||(32524401-32524439)
chr1 (1-46)||(11063626-11063671)
chr1 (1-46)||(35403071-35403116)
chr1 (1-45)||(50920024-50920068)
chr1 (4-46)||(9165156-9165198)
chr1 (1-46)||(4566618-4566662)
chr1 (1-46)||(6650665-6650710)
chr1 (1-45)||(1247183-1247227)
chr1 (1-45)||(33981125-33981169)
[»] chr8 (12 HSPs)
chr8 (4-46)||(29956357-29956399)
chr8 (1-46)||(16317680-16317725)
chr8 (1-46)||(18540368-18540413)
chr8 (1-45)||(6569733-6569777)
chr8 (3-46)||(22962080-22962123)
chr8 (4-43)||(42740567-42740606)
chr8 (4-46)||(6536593-6536635)
chr8 (1-46)||(8794307-8794351)
chr8 (1-46)||(12988498-12988542)
chr8 (1-46)||(29915881-29915926)
chr8 (1-46)||(33017284-33017328)
chr8 (1-45)||(31408084-31408128)
[»] chr7 (13 HSPs)
chr7 (1-46)||(26459371-26459416)
chr7 (1-46)||(39631914-39631959)
chr7 (1-45)||(29785263-29785307)
chr7 (1-45)||(37162312-37162356)
chr7 (1-46)||(17113865-17113910)
chr7 (1-46)||(21558198-21558243)
chr7 (1-46)||(25655189-25655234)
chr7 (1-45)||(43215254-43215298)
chr7 (3-46)||(42261006-42261049)
chr7 (3-45)||(7744074-7744116)
chr7 (4-42)||(27376722-27376760)
chr7 (1-46)||(33222440-33222485)
chr7 (3-39)||(31706497-31706533)
[»] chr2 (12 HSPs)
chr2 (1-46)||(2750587-2750632)
chr2 (1-46)||(4060175-4060220)
chr2 (1-46)||(30410510-30410555)
chr2 (3-44)||(45026815-45026856)
chr2 (1-45)||(14500347-14500391)
chr2 (1-45)||(42922485-42922529)
chr2 (3-46)||(34041549-34041592)
chr2 (1-46)||(21303955-21304000)
chr2 (1-45)||(40416352-40416396)
chr2 (1-46)||(4438940-4438985)
chr2 (1-45)||(13803565-13803609)
chr2 (1-45)||(41504898-41504942)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-46)||(42482-42526)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-45)||(45721-45765)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-45)||(35351-35395)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 33505231 - 33505071
Alignment:
Q  56 caatgaagattgaagacttggtacatgacattgggaaagaaagtcaaatggataacaaaatgagggagaaagatgctgattaacccgtaactgaggagaa 155  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33505231 caatgaagattgaagacttggtacatgacattaggaaagaaagtcaaatggataacaaaatgagggagaaagatgctgattaacccgtaactgaggagaa 33505132  T
Q  156 acaaagagaaaatgaaattagagaagcaaagcgaggaacagaagtggttaccataattcat 216  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33505131 acaaagagaaaatgaaatcagagaagcaaagagaggaacagaagtggttaccataattcat 33505071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7918475 - 7918430
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7918475 tcgattctctctggtgccaatttgaggggtttagtttagcttcttc 7918430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31074302 - 31074346
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  31074302 tcgattctctctggtgccaatttaagaggattagtttagcttctt 31074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37258372 - 37258328
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  37258372 tcgattctctctggtgtcaatttgagggggttagtttagcttctt 37258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34984876 - 34984918
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttc 43  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  34984876 tcgattctctctggtgccaatttgagggggttggtttagcttc 34984918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18596007 - 18595966
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagctt 42  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  18596007 tcgattttctctggtgccaatttgagggggttagtttagctt 18595966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14285231 - 14285266
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtt 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14285231 tcgattctctctggtgccaatttgagggggttagtt 14285266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18974030 - 18974071
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagctt 42  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  18974030 tcgattctccctggtgccaatttgagtgggttagtttagctt 18974071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21589358 - 21589403
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||    
T  21589358 tcgattccctctggtgccaatttaggtgggctagtttagcttcttc 21589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25627127 - 25627171
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||    
T  25627127 tcgattctctctggtgtcaatttga-ggggttagtttagcttcttc 25627171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10969923 - 10969878
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10969923 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 10969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30311376 - 30311421
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  30311376 tcgattctctttggtgccaatttgagggggttagtttagcttcttc 30311421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28703410 - 28703366
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  28703410 tcgattctctctggtgccaatttgaggaggttagtttagcttctt 28703366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 46518700 - 46518743
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  46518700 gattctctctgatgccaatttgagggggttagtttagcttcttc 46518743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7975499 - 7975540
Alignment:
Q  5 ttctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  7975499 ttctctctggtgccaatttgagggggttagtttaccttcttc 7975540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15048067 - 15048023
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||    
T  15048067 tcgattatctctggtgccaatttgagggggttagtttaacttctt 15048023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 53413018 - 53413053
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttag 39  Q
    |||||||||||||||||||| |||||||||||||||    
T  53413018 attctctctggtgccaatttgagggggttagtttag 53413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16354898 - 16354855
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||    
T  16354898 tcgattctctctggtgccaaattaagggg--tagtttagcttcttc 16354855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 26505364 - 26505322
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| ||||||| |||||||||||||| |||||||    
T  26505364 attctctctggtaccaatttcagggggttagtttaacttcttc 26505322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11306180 - 11306135
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  11306180 tcgattctctctggtgccaatttgagggggttagtttagcttcttc 11306135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12188309 - 12188264
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  12188309 tcgattctctctagtgccaatttgagggggttagtttagcttcttc 12188264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 23910112 - 23910074
Alignment:
Q  8 tctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23910112 tctctggtgccaatttgagggggttagtttagcttcttc 23910074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9583435 - 9583479
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  9583435 tcgattctctctggtgccaatttcggtgggttagtttagcttctt 9583479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13330157 - 13330201
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||| |||||||||| || ||||||||||||||||||    
T  13330157 tcgattctctcttgtgccaatttgagagggttagtttagcttctt 13330201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 19638001 - 19637965
Alignment:
Q  5 ttctctctggtgccaatttaagggggttagtttagct 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19638001 ttctctctggtgccaatttgagggggttagtttagct 19637965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1056691 - 1056646
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||||    
T  1056691 tcgattctctctggtgccaagttaggtgggttaatttagcttcttc 1056646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 3925817 - 3925858
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  3925817 attctctctggtatcaatttgagggggttagtttagcttctt 3925858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 15951305 - 15951264
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  15951305 attctctctggtaccaatttgagagggttagtttagcttctt 15951264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24256828 - 24256783
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| ||||||| |  ||||||||||||||||||    
T  24256828 tcgattctctctggtgtcaatttaggtaggttagtttagcttcttc 24256783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32250856 - 32250812
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||| |||| ||||||||| |||||| |||||||||||    
T  32250856 tcgattctctccggtgacaatttaagtgggttaatttagcttctt 32250812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15180808 - 15180853
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  15180808 tcgattctctctggtgccaatttgagggggttagtttagcttcttc 15180853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19680794 - 19680750
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  19680794 tcgattctctctggtgccaatttaaggaggttagtttagcttctt 19680750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 4249249 - 4249292
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  4249249 gattctctctggtgccaatttgagggggttagtttagcttcttc 4249292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6666432 - 6666387
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  6666432 tcgattctctctggtgcccatttgagggggttagtttagcttcttc 6666387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7292804 - 7292759
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  7292804 tcgattctctctagtgccaatttgagggggttagtttagcttcttc 7292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37109357 - 37109312
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  37109357 tcgattctctctggtgccaatttgagggggttagtttagtttcttc 37109312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38869838 - 38869883
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  38869838 tcgattccctctggtgccaatttgagggggttagtttagcttcttc 38869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 52880214 - 52880253
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagctt 42  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  52880214 gattctctctgatgccaatttaagggggttagtttagctt 52880253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23378026 - 23378071
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||    
T  23378026 tcgattctctctagtgccaatttgagggggctagtttagcttcttc 23378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50483075 - 50483120
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||    
T  50483075 tcgattctctcttgtgacaatttcagggggttagtttagcttcttc 50483120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2185038 - 2184994
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||    
T  2185038 tcgattctctccgatgccaatttgagggggttagtttagcttctt 2184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33632142 - 33632098
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||    
T  33632142 tcgattctctctggtgtcaatttgagggggttagtttaacttctt 33632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 1730492 - 1730450
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||    
T  1730492 attctctctggtgctaatttgaggggattagtttagcttcttc 1730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 16581770 - 16581808
Alignment:
Q  8 tctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| || |||||||||||||||||||    
T  16581770 tctctggtgccaatttgagagggttagtttagcttcttc 16581808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12793917 - 12793872
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||||||| | ||| || ||||||||||||    
T  12793917 tcgattctctctggtgccaatttaggtgggctaatttagcttcttc 12793872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37274465 - 37274420
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||| |||||||| ||| || ||||||||||||    
T  37274465 tcgattctctctggtgctaatttaagtgggctaatttagcttcttc 37274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 44194987 - 44194946
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||||||| |||| ||||||||| ||||||    
T  44194987 attctctctggtgccaatttgagggagttagtttaacttctt 44194946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20770981 - 20771025
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||| ||||||||||| ||||||||| |||| ||||||    
T  20770981 tcgattctctcaggtgccaatttgagggggttaatttaacttctt 20771025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2799932 - 2799977
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2799932 tcgattctctctggtgccaatttgagggggttagtttagcttcttc 2799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8177188 - 8177143
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8177188 tcgattctctctggtgccaatttgagggggttagtttagcttcttc 8177143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29753719 - 29753764
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29753719 tcgattctctctggtgccaatttaagagggttagtttagcttcttc 29753764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3679320 - 3679276
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  3679320 tcgattctctctggtgccaatttgagggggttagtttagcttctt 3679276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33700779 - 33700735
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  33700779 tcgattctctctggtgccaatttaagggggttagtttaacttctt 33700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40810537 - 40810582
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  40810537 tcgattctctctggtgccaatttgagagggttagtttagcttcttc 40810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35700024 - 35700068
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  35700024 tcgattctctctggtgtcaatttaagggggttggtttagcttctt 35700068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36371540 - 36371584
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  36371540 tcgattctctctgatgccaatttgagggggttagtttagcttctt 36371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8904484 - 8904526
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttc 43  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  8904484 tcgattctctctggtgccaatttgagggggttagtttaacttc 8904526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32524401 - 32524439
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttag 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  32524401 tcgattctctctggtgccaatttgagggggttagtttag 32524439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11063626 - 11063671
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||    
T  11063626 tcgattctctctagtgccaatttgaaggggttagtttagcttcttc 11063671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35403071 - 35403116
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||| || |||||||||||||| |||||||||||||||||    
T  35403071 tcgattctctgtgatgccaatttaagggagttagtttagcttcttc 35403116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50920024 - 50920068
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||| |||||| | |||||||||||||||||||    
T  50920024 tcgattctctctggtgtcaatttgaaggggttagtttagcttctt 50920068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 9165198 - 9165156
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||    
T  9165198 attctctctggtgccaatttgagggggttactttagtttcttc 9165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4566618 - 4566662
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||    
T  4566618 tcgattctctctgatgtcaatttaa-ggggttagtttagcttcttc 4566662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6650665 - 6650710
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| ||||||| | || ||||||||||||||||    
T  6650665 tcgattctctctggtgtcaatttaggtggattagtttagcttcttc 6650710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1247183 - 1247227
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||| ||||||| | ||||||| |||||||||||    
T  1247183 tcgattctctctggtaccaatttgaaggggttattttagcttctt 1247227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33981169 - 33981125
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||    
T  33981169 tcgattctctctgatgctcatttgagggggttagtttagcttctt 33981125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 29956399 - 29956357
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  29956399 attctctctggtgccaatttgagggggttagtttagcttcttc 29956357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16317680 - 16317725
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||    
T  16317680 tcgattctctctggtgccaatttcagtgggctagtttagcttcttc 16317725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18540368 - 18540413
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||    
T  18540368 tcgattctctctggtgccaatttgagagggttaatttagcttcttc 18540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6569777 - 6569733
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||    
T  6569777 tcgattctctttggtgtcaatttgagggggttagtttagcttctt 6569733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 22962123 - 22962080
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||| | ||| |||||||||||||||||||||||||||||    
T  22962123 gattctctttagtgtcaatttaagggggttagtttagcttcttc 22962080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 42740567 - 42740606
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttc 43  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  42740567 attctctctggtgtcaatttaagggagttagtttagcttc 42740606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 6536593 - 6536635
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||| | |||||| ||||||||||||    
T  6536593 attctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8794351 - 8794307
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  8794351 tcgattctctctggtaccaatttaa-ggggttaatttagcttcttc 8794307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12988498 - 12988542
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||    
T  12988498 tcgatcctctctggtgccaatttga-ggggttagtttagcttcttc 12988542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29915926 - 29915881
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||| ||||| |||||||||||||| | ||||||||||||||||    
T  29915926 tcgattttctctagtgccaatttaaggtgtttagtttagcttcttc 29915881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33017284 - 33017328
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||    
T  33017284 tcgattctctctggtgccaatttga-ggggttagtttaacttcttc 33017328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31408128 - 31408084
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||  || |||||||||||||||| |||||||||||    
T  31408128 tcgattctctctaatgtcaatttaagggggttaatttagcttctt 31408084  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26459416 - 26459371
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  26459416 tcgattctctctggtgccaatttgaaggggttagtttagcttcttc 26459371  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39631914 - 39631959
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  39631914 tcgattctctcttgtgccaatttgagggggttagtttagcttcttc 39631959  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29785307 - 29785263
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  29785307 tcgattctttctggtgccaatttgagggggttagtttagcttctt 29785263  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37162356 - 37162312
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  37162356 tcgattctctctggtgccaatttgaggggattagtttagcttctt 37162312  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17113865 - 17113910
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  17113865 tcgattctctctgatgctaatttgagggggttagtttagcttcttc 17113910  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21558198 - 21558243
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||    
T  21558198 tcgattctctctggtgccaatttaggtgggttaatttagcttcttc 21558243  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25655234 - 25655189
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||    
T  25655234 tcgattctctctggtgccaatttgaaggggttggtttagcttcttc 25655189  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43215254 - 43215298
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||    
T  43215254 tcgattctctcttatgccaatttgagggggttagtttagcttctt 43215298  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 42261049 - 42261006
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||| ||||||||||| | |||||||||||||||||||    
T  42261049 gattctctctagtgccaatttaggtgggttagtttagcttcttc 42261006  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 7744116 - 7744074
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||    
T  7744116 gattctctctggtgcaaatttgagggggtcagtttagcttctt 7744074  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 27376760 - 27376722
Alignment:
Q  4 attctctctggtgccaatttaagggggttagtttagctt 42  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  27376760 attctctctggtaccaatttaagggggttaatttagctt 27376722  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33222440 - 33222485
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| |||||| || |||||||||||| ||||||    
T  33222440 tcgattctctctggtgtcaatttgagagggttagtttagattcttc 33222485  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31706497 - 31706533
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttag 39  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  31706497 gattctctttggtgccaatttaagtgggttagtttag 31706533  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2750632 - 2750587
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  2750632 tcgattctctctagtgccaatttgagggggttagtttagcttcttc 2750587  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4060220 - 4060175
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  4060220 tcgattctctctggtgtcaatttgagggggttagtttagcttcttc 4060175  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30410555 - 30410510
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||    
T  30410555 tcgattttctctggtgccaatttgagggggttagtttagcttcttc 30410510  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 45026815 - 45026856
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttct 44  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45026815 gattctctctggtgccaatttgagggggttagtttagcttct 45026856  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14500347 - 14500391
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  14500347 tcgattctctctggtgccaatttgagggggatagtttagcttctt 14500391  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42922485 - 42922529
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| | |||||||||||||||||||    
T  42922485 tcgattctctctggtgccaatttgatggggttagtttagcttctt 42922529  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 34041592 - 34041549
Alignment:
Q  3 gattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  34041592 gattccctctggtgccaatttgagggggttagtttagcttcttc 34041549  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21304000 - 21303955
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  21304000 tcgattctctctggtgtcaatttgagggggttaatttagcttcttc 21303955  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40416396 - 40416352
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||    
T  40416396 tcgattctctctggtgccaatttgaaggggttagtttagattctt 40416352  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4438985 - 4438940
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||| |||||| ||||||| || |||||||||||||||||||    
T  4438985 tcgattctttctggtaccaatttgagagggttagtttagcttcttc 4438940  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13803565 - 13803609
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||| |||||| ||||||||| |||||||||||||| ||||||    
T  13803565 tcgattatctctgatgccaatttgagggggttagtttaccttctt 13803609  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41504942 - 41504898
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    ||||||||||| |||| ||||||||| |||||| |||||||||||    
T  41504942 tcgattctctccggtgtcaatttaagtgggttaatttagcttctt 41504898  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42526 - 42482
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttcttc 46  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||    
T  42526 tcgattctctttggtgccaatttaa-ggggttaatttagcttcttc 42482  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45765 - 45721
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||||||||||||| ||||||| | ||||||||||| ||||||    
T  45765 tcgattctctctggtgtcaatttaggtgggttagtttaacttctt 45721  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35395 - 35351
Alignment:
Q  1 tcgattctctctggtgccaatttaagggggttagtttagcttctt 45  Q
    |||||| |||||| ||||||||| |||||||| ||||||||||||    
T  35395 tcgattatctctgatgccaatttgagggggttggtttagcttctt 35351  T

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