View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_low_34 (Length: 214)

Name: NF10110_low_34
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_low_34
NF10110_low_34
[»] chr5 (7 HSPs)
chr5 (1-81)||(30481834-30481913)
chr5 (1-81)||(30714608-30714687)
chr5 (1-67)||(30058812-30058878)
chr5 (1-67)||(30678765-30678831)
chr5 (1-67)||(29870701-29870767)
chr5 (1-52)||(29851832-29851882)
chr5 (87-132)||(29870604-29870649)
[»] chr4 (1 HSPs)
chr4 (4-67)||(20298255-20298318)
[»] chr7 (1 HSPs)
chr7 (4-52)||(26705791-26705839)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30481913 - 30481834
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttaattctcgttgttga 81  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30481913 tactggtaagatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttattttt-attctcgttgttga 30481834  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 30714608 - 30714687
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttaattctcgttgttga 81  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  30714608 tactggtaggatctctatttacccttcttatgtttgcatttcaactgctcaaaaatctttattttt-attctcgttgttga 30714687  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30058878 - 30058812
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30058878 tactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 30058812  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30678765 - 30678831
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678765 tactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 30678831  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29870767 - 29870701
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 67  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29870767 tacttgtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 29870701  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29851882 - 29851832
Alignment:
Q  1 tactggtaggatctctatttccccttcttatgtttggatttcaactgctcaa 52  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||||||||    
T  29851882 tactggtaggctctctattttcc-ttcttatatttggatttcaactgctcaa 29851832  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 29870649 - 29870604
Alignment:
Q  87 acatgaaagatattttactgttctacctaagattgataaatgttct 132  Q
    |||||||||||||||||||||||  |||||||  ||||||||||||    
T  29870649 acatgaaagatattttactgttcatcctaagaaggataaatgttct 29870604  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 20298255 - 20298318
Alignment:
Q  4 tggtaggatctctatttccccttcttatgtttggatttcaactgctcaaaaatctttattttta 67  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||| | ||||||||||    
T  20298255 tggtaggatctctatttcctattcttatgtttggatttcaactactcaaaattttttattttta 20298318  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 26705839 - 26705791
Alignment:
Q  4 tggtaggatctctatttccccttcttatgtttggatttcaactgctcaa 52  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| ||||    
T  26705839 tggtacgatctctgtttccccttcttatgtttggatttcaactgttcaa 26705791  T

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