View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_low_4 (Length: 478)

Name: NF10110_low_4
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_low_4
NF10110_low_4
[»] chr5 (2 HSPs)
chr5 (19-460)||(39184739-39185182)
chr5 (21-158)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (20-169)||(42373538-42373686)
chr1 (20-301)||(17032737-17033026)
chr1 (19-173)||(19597952-19598107)
chr1 (103-171)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (60-177)||(16501182-16501300)
chr4 (103-171)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (52-178)||(31902910-31903036)
chr2 (52-207)||(39339357-39339512)
chr2 (21-158)||(25505480-25505615)
chr2 (50-163)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (24-176)||(9519052-9519205)
chr8 (109-171)||(34866640-34866702)
chr8 (84-163)||(10551752-10551832)
chr8 (103-171)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (20-171)||(37792747-37792899)
chr7 (109-171)||(38484991-38485053)
chr7 (52-207)||(47326396-47326551)
chr7 (109-178)||(3420242-3420311)
chr7 (60-163)||(12480298-12480402)
chr7 (103-171)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (39-135)||(25595121-25595217)
chr3 (52-173)||(17501759-17501880)
chr3 (20-163)||(5555991-5556136)
chr3 (62-160)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (60-171)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 39184739 - 39185182
Alignment:
Q  19 agaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacga 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39184739 agaatatacccacaagccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacga 39184838  T
Q  119 aacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtc 218  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39184839 aacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtc 39184938  T
Q  219 gccggagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcat 318  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||     
T  39184939 gccggagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcac 39185038  T
Q  319 gtgagacacccagagnnnnnnngtcgatatatacccaaaaccgc---caaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagc 415  Q
    |||||||||||||||       ||||||||||||| |||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39185039 gtgagacacccagag-aaaaaagtcgatatatacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagc 39185137  T
Q  416 tggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39185138 tggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc 39185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 8730427 - 8730292
Alignment:
Q  21 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 120  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  8730427 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 8730330  T
Q  121 cacaactacaaaacatgggcaacgacgccagtttgaag 158  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  8730329 ccaaacaacaaaacacgggcagcgacgccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 42373686 - 42373538
Alignment:
Q  20 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaa 119  Q
    |||||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| |||||||||||||    
T  42373686 gaatatacccacaa-ccaaagatagagacaaaactacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaa 42373588  T
Q  120 acacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 169  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373587 acacaacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 17033026 - 17032737
Alignment:
Q  20 gaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaaga 115  Q
    ||||| ||||||||  || |||||||| ||||| |||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| |||||||    
T  17033026 gaataaacccacaaatcagcgatagagacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaaga 17032927  T
Q  116 cgaaacacaactac-aaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgta 214  Q
    |||||  |||| || ||||||  || |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |     
T  17032926 cgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttc 17032827  T
Q  215 tgtcgccggagtaaac---aaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 301  Q
     |||| ||||||||||   ||||||  |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032826 cgtcgtcggagtaaacaaaaaccaagtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 19598107 - 19597952
Alignment:
Q  19 agaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac 116  Q
    ||||||||| ||||| ||| ||| |||| ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | |||||||     
T  19598107 agaatatactcacaaaccatcgaaagagacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagat 19598009  T
Q  117 gaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 173  Q
    ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598008 gaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  103 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  60 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 158  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  159 cggaatcacaacctaaatc 177  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  103 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  52 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 150  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  151 gtttgaagcggaatcacaacctaaatca 178  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  52 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 150  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  151 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 207  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 25505480 - 25505615
Alignment:
Q  21 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 120  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  25505480 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 25505577  T
Q  121 cacaactacaaaacatgggcaacgacgccagtttgaag 158  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  25505578 ccaaacaacaaaacacgggcagcgacgccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 22886011 - 22886124
Alignment:
Q  50 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 148  Q
    |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||||||    
T  22886011 aaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgc 22886109  T
Q  149 cagtttgaagcggaa 163  Q
    |||| ||||||||||    
T  22886110 cagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  24 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 121  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  122 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 176  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  109 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  84 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 163  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  103 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 37792899 - 37792747
Alignment:
Q  20 gaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacg 117  Q
    ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| | || |||| |    
T  37792899 gaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaagagaaagatg 37792801  T
Q  118 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    |||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792800 aaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  109 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  52 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 150  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  151 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 207  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  109 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 178  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  60 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 157  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  158 gcggaa 163  Q
    | ||||    
T  12480303 gtggaa 12480298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  103 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 171  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 25595121 - 25595217
Alignment:
Q  39 cgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 135  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595121 cgatagagacgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  52 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 150  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  151 gtttgaagcggaatcacaaccta 173  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 5556136 - 5555991
Alignment:
Q  20 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatcta-taggaagacg 117  Q
    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||| ||||||||| |  |||||||    
T  5556136 gaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaaacacatatctattttgaagacg 5556037  T
Q  118 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 163  Q
    || | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556036 aagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  62 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 159  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  60 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 158  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  159 cggaatcacaacc 171  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

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