View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_low_5 (Length: 476)

Name: NF10110_low_5
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_low_5
NF10110_low_5
[»] chr5 (4 HSPs)
chr5 (3-366)||(13094217-13094590)
chr5 (3-257)||(13024153-13024406)
chr5 (288-366)||(13022698-13022777)
chr5 (276-347)||(8117226-8117297)
[»] chr6 (1 HSPs)
chr6 (278-347)||(31462672-31462741)
[»] chr1 (4 HSPs)
chr1 (278-347)||(25711027-25711096)
chr1 (224-257)||(19635608-19635641)
chr1 (287-347)||(50740828-50740886)
chr1 (224-256)||(50740760-50740792)
[»] chr8 (3 HSPs)
chr8 (276-347)||(25029418-25029489)
chr8 (225-257)||(13341350-13341382)
chr8 (277-317)||(42887659-42887699)
[»] chr2 (2 HSPs)
chr2 (288-327)||(33803721-33803760)
chr2 (288-327)||(33808203-33808242)
[»] chr4 (2 HSPs)
chr4 (224-257)||(51850731-51850764)
chr4 (146-186)||(52643050-52643090)
[»] chr3 (1 HSPs)
chr3 (224-257)||(30485170-30485203)
[»] chr7 (1 HSPs)
chr7 (287-347)||(19835166-19835226)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 366
Target Start/End: Complemental strand, 13094590 - 13094217
Alignment:
Q  3 gtgatccgaatcaataagctttgatggcacacaaggtttttattgataaacttgatactatatgacgtttttatattgggtcaaaccaaagtagtcaata 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094590 gtgatccgattcgataagctttgatggcacacaaggtttttattcataaacttgatactatatgacgtttttatattgggtcaaaccaaagtagtcaata 13094491  T
Q  103 actaccgataacgttcgcacgtggcatagcggcgatgaaccgctagcggtgcaaaatcaaatagcggccacttcaggtgctataacatcataatggagca 202  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  ||| |||||||||    
T  13094490 actaccaataacggtcgcacgtggcatagcggcgatgaaccgctagcagtgcaaaatcaaatagtggccacttcaggtgctataatgtcagaatggagca 13094391  T
Q  203 gaaattggatgcgtccagcgactatttgattttactaggaaatttccaaattgac------tttaaaacc----nnnnnnnnagcattttgaatatttcg 292  Q
    ||||| | |||| | ||||||||||||||||||||||||||||||||||||||||      |||||||||              ||||||||| ||||||    
T  13094390 gaaatcgaatgc-ttcagcgactatttgattttactaggaaatttccaaattgaccatatttttaaaacctttttttttttttacattttgaaaatttcg 13094292  T
Q  293 taaaccctaaca-tttttcaaatctttctatcttctcatttgtgcctcgaaacacaacaaactggaaaacacgac 366  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13094291 taaaccctaacattttttcaaatctttctatcttctcatttgtgccttgaaacacaacaaactggaaaacacgac 13094217  T

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Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 13024406 - 13024153
Alignment:
Q  3 gtgatccgaatcaataagctttgatggcacacaaggtttttattgataaacttgatactatatgacgtttttatattgggtcaaaccaaagtagtcaata 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13024406 gtgatccgattcgataagctttgatggcacacaaggtttttattcataaacttgatactatatgacgtttttatattgggtcaaaccaaagtagtcaata 13024307  T
Q  103 actaccgataacgttcgcacgtggcatagcggcgatgaaccgctagcggtgcaaaatcaaatagcggccacttcaggtgctataacatcataatggagca 202  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  13024306 actaccaataacggtcgcacgtggcataacggcgatgaaccgctagcagtgcaaaatcaaatagtggccacttcaggtgctataacgtcagaatggagca 13024207  T
Q  203 gaaattggatgcgtccagcgactatttgattttactaggaaatttccaaattgac 257  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13024206 gaaatcggatgc-ttcagcgactatttgattttactaggaaatttccaaattgac 13024153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 13022777 - 13022698
Alignment:
Q  288 tttcgtaaaccctaacattttt-caaatctttctatcttctcatttgtgcctcgaaacacaacaaactggaaaacacgac 366  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13022777 tttcgtaaaccctaacattttttcaaatctttctatcttctcatttgtgcctcgaaacacaacaaactggaaaacacgac 13022698  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 8117226 - 8117297
Alignment:
Q  276 gcattttgaatatttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    |||||||||  |||||||||||||||||||||||||| | ||||| ||||||||  |||||| |||||||||    
T  8117226 gcattttgaggatttcgtaaaccctaacatttttcaactttttctctcttctcacctgtgccgcgaaacaca 8117297  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 31462741 - 31462672
Alignment:
Q  278 attttgaatatttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    |||||||  |||||||||||||||||||||||||| | ||||| ||||||||  ||||||  ||||||||    
T  31462741 attttgaggatttcgtaaaccctaacatttttcaactttttctctcttctcacctgtgccgtgaaacaca 31462672  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 25711096 - 25711027
Alignment:
Q  278 attttgaatatttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    |||||||  |||||||||||||||||||||||||| | ||||| ||||||||  ||||||  ||||||||    
T  25711096 attttgaggatttcgtaaaccctaacatttttcaagtttttctctcttctcacctgtgccgtgaaacaca 25711027  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 19635608 - 19635641
Alignment:
Q  224 ctatttgattttactaggaaatttccaaattgac 257  Q
    ||||||||||||| ||||||||||||||||||||    
T  19635608 ctatttgattttagtaggaaatttccaaattgac 19635641  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 50740828 - 50740886
Alignment:
Q  287 atttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    ||||||||||||||||||||||||||  |||||| ||||||||  | |||| |||||||||    
T  50740828 atttcgtaaaccctaacatttttcaa--ctttctctcttctcacatttgccgcgaaacaca 50740886  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 50740760 - 50740792
Alignment:
Q  224 ctatttgattttactaggaaatttccaaattga 256  Q
    ||||||||||||| |||||||||||||||||||    
T  50740760 ctatttgattttagtaggaaatttccaaattga 50740792  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 25029418 - 25029489
Alignment:
Q  276 gcattttgaatatttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    |||||||||  |||| ||||||||||||||||||||| | ||||| ||||||||  || ||| |||||||||    
T  25029418 gcattttgaggattttgtaaaccctaacatttttcaactttttctctcttctcacctgagccgcgaaacaca 25029489  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 13341350 - 13341382
Alignment:
Q  225 tatttgattttactaggaaatttccaaattgac 257  Q
    |||||||||||| ||||||||||||||||||||    
T  13341350 tatttgattttagtaggaaatttccaaattgac 13341382  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 42887659 - 42887699
Alignment:
Q  277 cattttgaatatttcgtaaaccctaacatttttcaaatctt 317  Q
    ||||||| | |||||||||||||||||||||||||| ||||    
T  42887659 cattttggagatttcgtaaaccctaacatttttcaactctt 42887699  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 33803760 - 33803721
Alignment:
Q  288 tttcgtaaaccctaacatttttcaaatctttctatcttct 327  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  33803760 tttcgtaaaccctaacatttttcaactctttctctcttct 33803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 33808242 - 33808203
Alignment:
Q  288 tttcgtaaaccctaacatttttcaaatctttctatcttct 327  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  33808242 tttcgtaaaccctaacatttttcaactctttctctcttct 33808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 51850764 - 51850731
Alignment:
Q  224 ctatttgattttactaggaaatttccaaattgac 257  Q
    ||||||||||||| ||||||||||||||||||||    
T  51850764 ctatttgattttagtaggaaatttccaaattgac 51850731  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 52643050 - 52643090
Alignment:
Q  146 tagcggtgcaaaatcaaatagcggccacttcaggtgctata 186  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  52643050 tagcagtgcagaatcaaatagcggccacttcagctgctata 52643090  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 30485203 - 30485170
Alignment:
Q  224 ctatttgattttactaggaaatttccaaattgac 257  Q
    ||||||||||||| ||||||||||||||||||||    
T  30485203 ctatttgattttagtaggaaatttccaaattgac 30485170  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 19835166 - 19835226
Alignment:
Q  287 atttcgtaaaccctaacatttttcaaatctttctatcttctcatttgtgcctcgaaacaca 347  Q
    |||||||||||||| ||||||||||| | ||||| |||| |||  |||||| |||||||||    
T  19835166 atttcgtaaaccctgacatttttcaactttttctctcttttcacctgtgccgcgaaacaca 19835226  T

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