View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_low_9 (Length: 376)
Name: NF10110_low_9
Description: NF10110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
| Q |
159 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
258 |
Q |
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| T |
5374850 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
5374751 |
T |
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| Q |
259 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
358 |
Q |
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| T |
5374750 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
5374651 |
T |
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| Q |
359 |
gaccta |
364 |
Q |
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| |||| |
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| T |
5374650 |
ggccta |
5374645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 320
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
| Q |
158 |
aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag |
256 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
5393078 |
aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat |
5392979 |
T |
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| Q |
257 |
aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct |
320 |
Q |
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| T |
5392978 |
aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct |
5392916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 5375482 - 5375341
Alignment:
| Q |
18 |
atttatttcataaaagccctctgggatagcttatttaatatagccctctgggatatatttctttgtagcattccattagataaggtccataccttnnnnn |
117 |
Q |
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| T |
5375482 |
atttatttcataa--gccctctgggatagcttatttaatatagccgtctgggatatatttctttgtagcattccattagataaggtccataccttaaaaa |
5375385 |
T |
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| Q |
118 |
nngaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
161 |
Q |
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| T |
5375384 |
aagaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
5375341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 5370346 - 5370387
Alignment:
| Q |
71 |
tatatttctttgtagcattccattagataaggtccatacctt |
112 |
Q |
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| T |
5370346 |
tatatttctttgtagcattccattagataaggtccatacctt |
5370387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
| Q |
159 |
aaagattttgctttatcaatttcattttgactatctactc |
198 |
Q |
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| T |
5354617 |
aaagattttgctttatcaatttcattttgacaatctactc |
5354656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
| Q |
287 |
aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa |
341 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||| |
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| T |
5354681 |
aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa |
5354735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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