View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10111_high_11 (Length: 250)
Name: NF10111_high_11
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28958876 - 28958761
Alignment:
| Q |
1 |
gttgtctctatttattttttccgaggactaaaacttaattgtatttttctcaaggactaaattaattttcacattttttatttcggtttaaaatggctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28958876 |
gttgtctctatttattttttccgaggactaaaacttaattgtatttttctcaaggactaaattaattttcacattttttatttcggtttaaaatggctct |
28958777 |
T |
|
| Q |
101 |
tcgttaaataaagaat |
116 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
28958776 |
tcgctaaataaagaat |
28958761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 28958659 - 28958548
Alignment:
| Q |
128 |
aaggaatttaaaaattagactcatttcctccatttatatttgcatgacagtgttgtgacattttataccagnnnnnnnaaaatatgctgaaactgtcact |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28958659 |
aaggaatttaaaaattagactcatttcctccattcatatttgcatgacagtgttgtgacattttataccagtttttttaaaatatgctgaaactgtcact |
28958560 |
T |
|
| Q |
228 |
tccttaattcat |
239 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28958559 |
tccttaattcat |
28958548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University