View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_high_16 (Length: 242)
Name: NF10111_high_16
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 36525453 - 36525293
Alignment:
| Q |
19 |
attctatcttcaaataatggtagtgttactaactttatttctttcttcaattatgaataattttcaaattttgtttattttccgtaagaatacatgagta |
118 |
Q |
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| T |
36525453 |
attctatcttcaaataatggtagtgttactaactttatttctttcttcaattatgaataattttcagattttgtttattttctgtagaaatagatgagt- |
36525355 |
T |
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| Q |
119 |
aaaattatgagataactctccaagaaaaaatacattggtaagcgtatgatattcatctcatt |
180 |
Q |
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| T |
36525354 |
aaaattataaggtaactctccaagaaaaaatatattggtaagcgtatgaaattcatctcatt |
36525293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 36525279 - 36525134
Alignment:
| Q |
34 |
aatggtagtgttactaactttatttctttcttcaattatgaataattttcaaattttgtttattttccgtaagaatacatgagtaaaaattatgagataa |
133 |
Q |
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| T |
36525279 |
aatggtagtgttactaactttatttctttcttcaattatgaataattttcagattttgtttattttctgtagaaatagatgagt-aaaattataagataa |
36525181 |
T |
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| Q |
134 |
ctctccaagaaaaaatacattggtaagcgtatgatattcatctcatt |
180 |
Q |
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| T |
36525180 |
ctctccaagaaaaaatatattggtaagcgtatgaaattcatctcatt |
36525134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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