View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_high_19 (Length: 239)

Name: NF10111_high_19
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_high_19
NF10111_high_19
[»] chr7 (17 HSPs)
chr7 (1-110)||(9199455-9199565)
chr7 (79-163)||(23930221-23930305)
chr7 (87-166)||(7133248-7133327)
chr7 (82-163)||(5938477-5938558)
chr7 (82-140)||(17780080-17780138)
chr7 (59-140)||(43249974-43250056)
chr7 (40-136)||(23751864-23751959)
chr7 (84-140)||(29812660-29812716)
chr7 (83-130)||(38134412-38134459)
chr7 (79-145)||(38804546-38804612)
chr7 (83-140)||(2525839-2525897)
chr7 (79-145)||(4017785-4017851)
chr7 (83-117)||(44172909-44172943)
chr7 (83-136)||(12278841-12278894)
chr7 (80-133)||(22683758-22683811)
chr7 (83-116)||(23165408-23165441)
chr7 (84-128)||(36314635-36314679)
[»] chr3 (26 HSPs)
chr3 (40-140)||(52369739-52369838)
chr3 (45-145)||(12704648-12704747)
chr3 (79-166)||(21211290-21211377)
chr3 (83-166)||(25074795-25074878)
chr3 (87-130)||(8039216-8039259)
chr3 (83-162)||(14223827-14223906)
chr3 (84-134)||(3730167-3730217)
chr3 (59-136)||(24205041-24205119)
chr3 (79-136)||(15864835-15864892)
chr3 (84-145)||(25892467-25892528)
chr3 (72-136)||(25365457-25365521)
chr3 (79-139)||(25652028-25652088)
chr3 (84-136)||(26665143-26665195)
chr3 (84-140)||(41319306-41319362)
chr3 (87-163)||(51512156-51512232)
chr3 (83-130)||(20691325-20691372)
chr3 (83-166)||(27903638-27903721)
chr3 (83-130)||(40150577-40150624)
chr3 (85-131)||(1830351-1830397)
chr3 (79-161)||(8903434-8903515)
chr3 (83-133)||(34189433-34189483)
chr3 (40-68)||(3180845-3180873)
chr3 (83-115)||(9210846-9210878)
chr3 (83-131)||(21149073-21149121)
chr3 (83-130)||(27513668-27513716)
chr3 (85-145)||(34307771-34307831)
[»] chr2 (15 HSPs)
chr2 (40-142)||(30563373-30563474)
chr2 (83-163)||(24011042-24011122)
chr2 (79-142)||(25544483-25544546)
chr2 (87-140)||(11308000-11308053)
chr2 (83-140)||(23354648-23354705)
chr2 (83-138)||(10535757-10535812)
chr2 (82-136)||(12748689-12748743)
chr2 (83-129)||(18570978-18571024)
chr2 (83-130)||(34006997-34007044)
chr2 (89-123)||(6180878-6180912)
chr2 (83-145)||(19573984-19574046)
chr2 (83-117)||(40681988-40682022)
chr2 (83-140)||(23354991-23355048)
chr2 (36-68)||(11308090-11308122)
chr2 (83-123)||(31026701-31026741)
[»] chr6 (14 HSPs)
chr6 (79-140)||(34446567-34446628)
chr6 (39-134)||(12235521-12235608)
chr6 (79-139)||(6389745-6389805)
chr6 (70-141)||(30781289-30781360)
chr6 (79-136)||(12086345-12086402)
chr6 (82-132)||(6299517-6299567)
chr6 (82-132)||(6306327-6306377)
chr6 (83-145)||(17168454-17168516)
chr6 (83-140)||(19602177-19602234)
chr6 (83-117)||(2140500-2140534)
chr6 (87-129)||(9024183-9024225)
chr6 (87-117)||(29670903-29670933)
chr6 (83-136)||(13689193-13689246)
chr6 (80-145)||(26247429-26247494)
[»] chr4 (19 HSPs)
chr4 (79-163)||(24343509-24343593)
chr4 (79-140)||(20743274-20743335)
chr4 (79-145)||(3144643-3144709)
chr4 (83-162)||(19230281-19230362)
chr4 (84-139)||(31243545-31243600)
chr4 (83-129)||(18513248-18513294)
chr4 (83-128)||(5654599-5654644)
chr4 (83-140)||(8820414-8820471)
chr4 (79-136)||(16402211-16402268)
chr4 (83-123)||(10546154-10546194)
chr4 (83-166)||(30520406-30520490)
chr4 (59-145)||(34589699-34589784)
chr4 (79-123)||(43299984-43300028)
chr4 (79-123)||(43300618-43300662)
chr4 (83-130)||(14465300-14465347)
chr4 (79-117)||(32910553-32910591)
chr4 (81-130)||(11110207-11110256)
chr4 (40-128)||(25950552-25950644)
chr4 (83-115)||(43188618-43188650)
[»] chr5 (17 HSPs)
chr5 (41-163)||(43554493-43554607)
chr5 (82-139)||(18607094-18607151)
chr5 (84-121)||(39424648-39424685)
chr5 (86-145)||(39695990-39696049)
chr5 (83-141)||(5467973-5468031)
chr5 (91-145)||(26205751-26205805)
chr5 (85-122)||(2039863-2039900)
chr5 (83-128)||(28296334-28296379)
chr5 (85-134)||(31264446-31264495)
chr5 (83-122)||(11596469-11596508)
chr5 (84-163)||(25863211-25863290)
chr5 (84-118)||(7089111-7089145)
chr5 (84-130)||(38806854-38806900)
chr5 (79-136)||(7997166-7997223)
chr5 (85-137)||(21137697-21137749)
chr5 (83-135)||(37472598-37472650)
chr5 (83-123)||(43208287-43208327)
[»] chr1 (13 HSPs)
chr1 (79-164)||(42004919-42005004)
chr1 (79-145)||(40747764-40747830)
chr1 (79-145)||(6936391-6936457)
chr1 (41-133)||(11634127-11634220)
chr1 (40-135)||(6573952-6574047)
chr1 (79-138)||(21145468-21145528)
chr1 (83-130)||(11412774-11412821)
chr1 (82-117)||(11571590-11571625)
chr1 (83-130)||(19637774-19637821)
chr1 (79-134)||(22794080-22794135)
chr1 (84-122)||(3921674-3921712)
chr1 (46-75)||(1737766-1737795)
chr1 (85-129)||(30847727-30847771)
[»] chr8 (15 HSPs)
chr8 (84-140)||(40063958-40064014)
chr8 (40-112)||(30068052-30068125)
chr8 (79-163)||(44067518-44067607)
chr8 (80-136)||(35431140-35431196)
chr8 (79-145)||(26915231-26915297)
chr8 (79-136)||(1676714-1676771)
chr8 (60-140)||(13845217-13845297)
chr8 (84-136)||(39820436-39820488)
chr8 (84-163)||(14513147-14513226)
chr8 (79-134)||(28883880-28883935)
chr8 (85-123)||(29198492-29198530)
chr8 (83-128)||(3508058-3508103)
chr8 (79-140)||(16869711-16869772)
chr8 (84-117)||(34201065-34201098)
chr8 (79-139)||(13009490-13009550)
[»] scaffold0598 (1 HSPs)
scaffold0598 (80-137)||(8052-8109)
[»] scaffold0007 (1 HSPs)
scaffold0007 (59-140)||(225264-225346)
[»] scaffold0199 (1 HSPs)
scaffold0199 (79-136)||(1951-2008)
[»] scaffold0085 (1 HSPs)
scaffold0085 (83-129)||(26004-26050)
[»] scaffold0571 (1 HSPs)
scaffold0571 (83-115)||(7696-7728)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9199565 - 9199455
Alignment:
Q  1 tctttttgtagttggatttctggatttgttagttacttgctatgaagcacggacacaaacacggacactgaacactggc-acggataataatttgagaaa 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | || |||||||||||||||||    
T  9199565 tctttctgtagttggatttctggatttgttagttacttgctatgaagcacggacacaaacacaaacactgaacactgacaacagataataatttgagaaa 9199466  T
Q  100 atgacatgatt 110  Q
    |||||||||||    
T  9199465 atgacatgatt 9199455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 23930221 - 23930305
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    |||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||||||||||| || |  ||||||||||||||||    
T  23930221 cacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgacac 23930305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 7133327 - 7133248
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacactgg 166  Q
    |||||||||||||||||||| ||||| |||| |||||||||  ||||||||||| ||||  || ||||||||||||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgg 7133248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 5938477 - 5938558
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    |||||||||||||| ||||| |||| ||||| | || | |||||||| ||||||||||||||||  ||||||||||||||||    
T  5938477 ggataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacac 5938558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 17780138 - 17780080
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||||||||| |||||||||||| |||| ||||| | ||||||||||||||||||||    
T  17780138 ggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtc 17780080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 43249974 - 43250056
Alignment:
Q  59 acacggacactga-acactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||| || | | |||||||||||||||||||||||||||| || || |||| | ||| ||||||||||||||||    
T  43249974 acacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc 43250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 23751864 - 23751959
Alignment:
Q  40 ctatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||| | |||||||||||| ||||  ||| || | ||||||||||||||||| ||||||| || ||| | |||| ||||||||||||||||||    
T  23751864 ctatgaagtatggacacaaacacagacatcgaatac-gacacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23751959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 29812716 - 29812660
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||||||||||||||||| || ||| | |||| ||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 29812660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 38134459 - 38134412
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  38134459 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcg 38134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 38804612 - 38804546
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||||||| |||||||||||| || ||  ||| ||||||||||||||| |||||| ||||    
T  38804612 cacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggaca 38804546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 2525897 - 2525839
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtc-gtgtcggtgtc 140  Q
    |||||||||||||| ||||||||| ||||||| || ||||| ||||| |||||||||||    
T  2525897 gataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtcggtgtc 2525839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 4017851 - 4017785
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||||||||||||||| || || ||| | |||| ||||| ||||||||| |||||| ||||    
T  4017851 cacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcggaca 4017785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 44172943 - 44172909
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgta 117  Q
    |||||||||||||||||||||||| ||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgta 44172909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 12278841 - 12278894
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||| |||||||||||| ||||| |||| | ||| ||||||||||||    
T  12278841 gataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgg 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 22683811 - 22683758
Alignment:
Q  80 acggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgt 133  Q
    ||||||||||||||||||| |||| || ||||| || | |||||||||||||||    
T  22683811 acggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 23165441 - 23165408
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgt 116  Q
    ||||||| ||||||||||||||||||||||||||    
T  23165441 gataatattttgagaaaatgacatgattcaatgt 23165408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 36314679 - 36314635
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgt 128  Q
    |||||||||||||||||||||||  ||||||||| ||||| ||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgt 36314635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 52369739 - 52369838
Alignment:
Q  40 ctatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    |||||||||||||||||| |||||||||| | |||| | || |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  52369739 ctatgaagcacggacacagacacggacaccggacac-gacatggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgt 52369837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 12704747 - 12704648
Alignment:
Q  45 aagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagac 144  Q
    ||||||||||||| ||| |||||| | ||||   ||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||    
T  12704747 aagcacggacacagacaaggacaccggacacaa-cacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggac 12704649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 21211290 - 21211377
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacactgg 166  Q
    ||||||||||||||||||||||| ||||  |||| |||| | || ||||||||||||||||  ||||  || ||||||||||||||||    
T  21211290 cacggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgg 21211377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 25074795 - 25074878
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacactgg 166  Q
    |||||||||||||||||||||||| ||| | |||| ||||||| || ||||||||||| ||||   | ||||||||||||||||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgg 25074878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 8039216 - 8039259
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  8039216 ataatttgagaaaatggcatgattcaatgtaatcataggtgtcg 8039259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 14223906 - 14223827
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgaca 162  Q
    |||||||||||||||||| || || ||| | |||||||||| |||||||||||||||| ||||  ||  |||||||||||    
T  14223906 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgacacgtgtccgaca 14223827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 3730217 - 3730167
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtc 134  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 24205119 - 24205041
Alignment:
Q  59 acacggacactga-acactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||| || | | |||||||||||||||||||||||||||| || || |||| | ||| ||||||||||||    
T  24205119 acacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 24205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 15864835 - 15864892
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||| ||||||| || ||| | |||| ||||||||||||||||||    
T  15864835 cacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 15864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 25892467 - 25892528
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||| ||||||||| || ||||| |||| |||||||||||||||| ||||| ||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggaca 25892528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 25365457 - 25365521
Alignment:
Q  72 acactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||| |||| ||||||||||||||||| ||||||| ||||  |||| ||||| ||||||||||||    
T  25365457 acaccggcatggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcgg 25365521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 25652088 - 25652028
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    ||||||||||||||||||||||||| || ||||| |||| | |||||||| ||||| ||||    
T  25652088 cacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgt 25652028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 26665143 - 26665195
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||||||| ||||||| |||| | ||||| ||||||||||    
T  26665143 ataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcgg 26665195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 41319362 - 41319306
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||||||||| |||||||||| |||||||||| |  || ||||||||||||||||    
T  41319362 ataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgtcggtgtc 41319306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 51512232 - 51512156
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    ||||||||| ||||| |||| |||||||| | ||||| ||||||||||||||||  |||  |||||||||| |||||    
T  51512232 ataatttgataaaatcacataattcaatggaatcatatgtgtcgtgtcggtgtcgaacaccgatgcgtgtctgacac 51512156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 20691325 - 20691372
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 27903638 - 27903721
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacactgg 166  Q
    |||||||||||||||||| || || ||| |||||| ||||| |||| ||||||||||| || |  || ||||||| ||||||||    
T  27903638 gataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacactgg 27903721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 40150624 - 40150577
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgtgtcg 40150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcataggtgtcgt 131  Q
    ||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 8903434 - 8903515
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgac 161  Q
    ||||||||||| |||||||||||||||| ||| | |||| | ||||||||||||||| || | ||||   |||||||||||||    
T  8903434 cacggataatattttgagaaaatgacat-atttagtgtaattataggtgtcgtgtcgatgccggacacctatgcgtgtccgac 8903515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 34189433 - 34189483
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgt 133  Q
    ||||||||||||||||||||||||  |||| |||| || ||||||||||||    
T  34189433 gataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 3180873 - 3180845
Alignment:
Q  40 ctatgaagcacggacacaaacacggacac 68  Q
    |||||||||||||||||||||||||||||    
T  3180873 ctatgaagcacggacacaaacacggacac 3180845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 9210878 - 9210846
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatg 115  Q
    |||||||||||||||||||||||| ||||||||    
T  9210878 gataataatttgagaaaatgacataattcaatg 9210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 21149073 - 21149121
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgt 131  Q
    |||||||||||||||||||||||| ||||| |||| ||| || ||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaatcaaagatgtcgt 21149121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 27513716 - 27513668
Alignment:
Q  83 gataataatttgag-aaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  27513716 gataataatttgagaaaaatgacattattcaatgtaatcatatgtgtcg 27513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 34307831 - 34307771
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||||||||| ||||  |||| |||| | ||| |||||||||||||||| ||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcggaca 34307771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 30563373 - 30563474
Alignment:
Q  40 ctatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    |||||||||||  ||||||||||| |||||  |||| | |||||||||||||||||||||||||||| ||||||||||   |||||||| ||||||||||    
T  30563373 ctatgaagcacatacacaaacacgaacactagacac-gacacggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgt 30563471  T
Q  140 cag 142  Q
    |||    
T  30563472 cag 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 24011042 - 24011122
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    |||||||||||||||||||||||| ||| | |||| |||||||||||| ||||||||| || |  ||||||||||||||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacac 24011122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 25544483 - 25544546
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcag 142  Q
    |||| |||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||    
T  25544483 cacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcag 25544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 11308053 - 11308000
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtc 11308000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 23354705 - 23354648
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||||||||||| || ||| | |||| ||||||||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 23354648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 10535812 - 10535757
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtg 138  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||||||||| ||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 12748689 - 12748743
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||||||||||||||||||||  |||| |||| |||||||||| |||||||    
T  12748689 ggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcgg 12748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 18570978 - 18571024
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtc 129  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 34007044 - 34006997
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    ||||||||||||||||| |||||| ||||| |||| ||||||||||||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 6180912 - 6180878
Alignment:
Q  89 aatttgagaaaatgacatgattcaatgtattcata 123  Q
    ||||||||||||||||||||||||||||| |||||    
T  6180912 aatttgagaaaatgacatgattcaatgtaatcata 6180878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 19573984 - 19574046
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||| ||||||| |||| ||||| |||| | ||||||| |||||||||||| ||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcggaca 19574046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 40681988 - 40682022
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgta 117  Q
    |||||||||||||||||||||||| ||||||||||    
T  40681988 gataataatttgagaaaatgacataattcaatgta 40682022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 23355048 - 23354991
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||||||||||| || ||| | || | ||||||||||| ||||||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtc 23354991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 11308122 - 11308090
Alignment:
Q  36 cttgctatgaagcacggacacaaacacggacac 68  Q
    |||||||||||||||||||||| ||||||||||    
T  11308122 cttgctatgaagcacggacacagacacggacac 11308090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 31026701 - 31026741
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcata 123  Q
    ||||||||||| |||||||||||| |||||||||| |||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaatcata 31026741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 34446567 - 34446628
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  34446567 cacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtc 34446628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 12235608 - 12235521
Alignment:
Q  39 gctatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtc 134  Q
    ||||||||||||||||||| |||||||||        || |||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  12235608 gctatgaagcacggacacagacacggaca--------tgacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 6389745 - 6389805
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    ||||||||||||||||||||||||| || ||| | |||| |||||||||||||||||||||    
T  6389745 cacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 30781360 - 30781289
Alignment:
Q  70 gaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtca 141  Q
    |||||||| ||||  |||||||||||||||||||||| ||| | |||| ||||||||||| |||||||||||    
T  30781360 gaacactgacacgtgtaataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgtca 30781289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 12086402 - 12086345
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||||| |||||||| ||||| | || ||||||||||||||||||    
T  12086402 cacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 6299517 - 6299567
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtg 132  Q
    |||||||||||||||||||||| || |||||||||| | ||||||||||||    
T  6299517 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 6306327 - 6306377
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtg 132  Q
    |||||||||||||||||||||| || |||||||||| | ||||||||||||    
T  6306327 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 17168516 - 17168454
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||||||||||||| || ||| | |||| | |||||||||||||||||||| ||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggaca 17168454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 19602234 - 19602177
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||||||||||| || ||||| |||| |||||||| | |||||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtc 19602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 2140534 - 2140500
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgta 117  Q
    |||||||||||||||||||||||| ||||||||||    
T  2140534 gataataatttgagaaaatgacataattcaatgta 2140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 9024225 - 9024183
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgtattcataggtgtc 129  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtc 9024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 29670903 - 29670933
Alignment:
Q  87 ataatttgagaaaatgacatgattcaatgta 117  Q
    |||||||||||||||||||||||||||||||    
T  29670903 ataatttgagaaaatgacatgattcaatgta 29670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 13689246 - 13689193
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||||| |||   ||||||||| |||||||| |||||||||    
T  13689246 gataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtcgg 13689193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 26247429 - 26247494
Alignment:
Q  80 acggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||||||| ||||||||||||  || | | || |||||||| ||||||||||||| ||||    
T  26247429 acggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcggaca 26247494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 24343509 - 24343593
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    ||||||||||||||||||||||| |||| ||||| |||| | |||||||||||||||||||| ||||  || |||||||||||||    
T  24343509 cacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacac 24343593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 20743335 - 20743274
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||    
T  20743335 cacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtc 20743274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 3144709 - 3144643
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||||||| ||||||||| || ||| | |||| |||||||||||||||||||||||||||    
T  3144709 cacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagaca 3144643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 19230362 - 19230281
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtc--gtgtcggtgtcagacattgatgcgtgtccgaca 162  Q
    ||||||||||||||||||| |||| |||||||||| | |||||||||  ||||||||||||||||  ||||||||| |||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaattataggtgtcgtgtgtcggtgtcagacacggatgcgtgttcgaca 19230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 31243600 - 31243545
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgt 31243545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 18513294 - 18513248
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtc 129  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 5654644 - 5654599
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgt 128  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 8820414 - 8820471
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||| ||||| |||| |||||||| | ||||| ||||||||||||||||    
T  8820414 gataataatttgataaaatcacataattcaatggagtcatatgtgtcgtgtcggtgtc 8820471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 16402268 - 16402211
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||||||||| ||||||| || |||| | |||| |||||||||||    
T  16402268 cacggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 16402211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 10546154 - 10546194
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcata 123  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaatcata 10546194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 30520490 - 30520406
Alignment:
Q  83 gataataatttgagaaaa-tgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacactgg 166  Q
    ||||||||||||| |||| |||||| ||||| |||| |||||||||| ||||| ||||   ||||||||||||||| || |||||    
T  30520490 gataataatttgaaaaaaatgacataattcagtgtaatcataggtgtagtgtcagtgttgcacattgatgcgtgtctgagactgg 30520406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 34589784 - 34589699
Alignment:
Q  59 acacggacactga-acactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||| || ||| || ||| ||||| |||||||||||||||||| |||||||||| ||||  |||||||||| ||||| ||||    
T  34589784 acacggacacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatcat--gtgtcgtgtcagtgtcggaca 34589699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 43300028 - 43299984
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcata 123  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||    
T  43300028 cacggataataatttgagaaaattacataattcaatgtaatcata 43299984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 43300618 - 43300662
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcata 123  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||    
T  43300618 cacggataataatttgagaaaattacataattcaatgtaatcata 43300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 14465347 - 14465300
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  14465347 gataataatttgagaaaatgacataattcaatttaatcatatgtgtcg 14465300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 32910553 - 32910591
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgta 117  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  32910553 cacggataataatttgagaaaatgacataattcagtgta 32910591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 11110207 - 11110256
Alignment:
Q  81 cggataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    |||| ||||||||||||||||||||| |||| ||||| ||||| ||||||    
T  11110207 cggacaataatttgagaaaatgacataattcgatgtaatcatatgtgtcg 11110256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 25950644 - 25950552
Alignment:
Q  40 ctatgaagcacggacacaaacac-ggacac----tgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgt 128  Q
    |||| ||||||||||||| |||| ||||||    ||||||| | ||| ||||||||||||| |||||||||| ||||  |||||||||||||||    
T  25950644 ctataaagcacggacacagacaccggacacaacatgaacaccgacaccgataataatttga-aaaatgacataattctgtgtattcataggtgt 25950552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 43188618 - 43188650
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatg 115  Q
    |||||||||||||||||||||||| ||||||||    
T  43188618 gataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 43554493 - 43554607
Alignment:
Q  41 tatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||||||| ||||||||||        | |||| |||||||||||||||||||| || ||| | |||| ||||||||||||||||||||||    
T  43554493 tatgaagcacggacacagacacggacac--------gacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 43554584  T
Q  141 agacattgatgcgtgtccgacac 163  Q
     ||||  || |||||||||||||    
T  43554585 ggacaccgacgcgtgtccgacac 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 18607151 - 18607094
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||    
T  18607151 ggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgt 18607094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 39424648 - 39424685
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattca 121  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39424648 ataataatttgagaaaatgacatgattcaatgtattca 39424685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 39696049 - 39695990
Alignment:
Q  86 aataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||||||||||| || ||| | |||| |||||||||||||||||||||| ||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgaca 39695990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 5468031 - 5467973
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtca 141  Q
    ||||||||||||| ||||| |||| ||||| |||| | |||||||||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcggtgtca 5467973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 26205805 - 26205751
Alignment:
Q  91 tttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||||||||| ||||| |||| ||||||||||||||| |||||| ||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcggaca 26205751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 2039900 - 2039863
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcat 122  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2039900 taataatttgagaaaatgacatgattcaatgtaatcat 2039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 28296334 - 28296379
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgt 128  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  28296334 gataataatttgagaaaatgacataattcaatgtactcatatgtgt 28296379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtc 134  Q
    |||||||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 11596508 - 11596469
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcat 122  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  11596508 gataataatttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 25863211 - 25863290
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    |||||||||||||||||||| || ||||| |||| | ||| |||||||||| ||||| | ||  |||||||||| |||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccgatgcgtgtctgacac 25863290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 7089145 - 7089111
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtat 118  Q
    |||||||||||||||||||||| ||||||||||||    
T  7089145 ataataatttgagaaaatgacaggattcaatgtat 7089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 38806900 - 38806854
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  38806900 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcg 38806854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 7997223 - 7997166
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    ||||||||||||||||||||||||| || || || |||| | ||| ||||||||||||    
T  7997223 cacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg 7997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 21137697 - 21137749
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggt 137  Q
    ||||||| |||||||||||| | ||||| || | |||||||||||||||||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggt 21137749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 37472650 - 37472598
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcg 135  Q
    |||||||||| ||||||||||||| |||| || || ||||| |||||||||||    
T  37472650 gataataattcgagaaaatgacataattcgatataatcatatgtgtcgtgtcg 37472598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 43208327 - 43208287
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcata 123  Q
    |||| ||||||||||||||||||| |||||||||| |||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaatcata 43208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 42005004 - 42004919
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacact 164  Q
    |||||||||||||||||||||||||||| ||| | |||| |||||||||| ||||||||||| ||||  || || |||||||||||    
T  42005004 cacggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgacact 42004919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 40747830 - 40747764
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||||| ||| |||||| ||||    
T  40747830 cacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggaca 40747764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 6936457 - 6936391
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||||||| |||||||||||||| ||| | |||| |||||||||||||||| ||||| ||||    
T  6936457 cacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggaca 6936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 11634220 - 11634127
Alignment:
Q  41 tatgaagcacggacacaaacacggacactgaacactggcac-ggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgt 133  Q
    |||||||||| |||||  |||||||||| | |||| | ||| |||||||||||||||||||  |||| ||| |||||| |||||||||||||||    
T  11634220 tatgaagcacagacaccgacacggacaccggacaccgacaccggataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgt 11634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 6573952 - 6574047
Alignment:
Q  40 ctatgaagcacggacacaaacacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcg 135  Q
    |||||||||||||||| | |||| ||||| | |||| | ||||||| ||||||||||| ||||| || ||| | |||| |||||||||| ||||||    
T  6573952 ctatgaagcacggacatagacactgacaccggacaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 21145468 - 21145528
Alignment:
Q  79 cacggataataatttgagaaaa-tgacatgattcaatgtattcataggtgtcgtgtcggtg 138  Q
    ||||||||||||||||| |||| |||||| ||||| |||| ||||||| ||||||||||||    
T  21145468 cacggataataatttgaaaaaaatgacataattcagtgtaatcataggcgtcgtgtcggtg 21145528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 11412821 - 11412774
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    ||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  11412821 gataataatatgagaaaatgacataattcaatgtgatcataggtgtcg 11412774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 11571590 - 11571625
Alignment:
Q  82 ggataataatttgagaaaatgacatgattcaatgta 117  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11571590 ggataataatttgagaaaatgacataattcaatgta 11571625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 19637774 - 19637821
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtcg 130  Q
    ||||||||||| |||||||||||| |||||||||| ||||| ||||||    
T  19637774 gataataatttaagaaaatgacattattcaatgtaatcatatgtgtcg 19637821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 22794135 - 22794080
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtc 134  Q
    ||||||||||||||||| |||||||||| || || |||| | ||||||||||||||    
T  22794135 cacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 3921674 - 3921712
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcat 122  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaatcat 3921712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 1737795 - 1737766
Alignment:
Q  46 agcacggacacaaacacggacactgaacac 75  Q
    ||||||||||||||||||||||||||||||    
T  1737795 agcacggacacaaacacggacactgaacac 1737766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 30847771 - 30847727
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcataggtgtc 129  Q
    ||||||||||| |||||||||| |||||||||| ||||| |||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtc 30847727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 40063958 - 40064014
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtc 40064014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 30068125 - 30068052
Alignment:
Q  40 ctatgaagcacggacacaaacacggacactgaacactgg-cacggataataatttgagaaaatgacatgattca 112  Q
    |||||||||||||||||| | |  ||||| | ||||||| |||||||||||||||||||||||||||| |||||    
T  30068125 ctatgaagcacggacacatataatgacaccggacactggacacggataataatttgagaaaatgacataattca 30068052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 44067518 - 44067607
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtca-----gacattgatgcgtgtccgacac 163  Q
    |||||||||||||||||||||||||||| || || |||| | ||| ||||||||||||||||      |||| |||||||||||||||||    
T  44067518 cacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcgtgtcggacactgatgcgtgtccgacac 44067607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 35431196 - 35431140
Alignment:
Q  80 acggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||||||||||||||||||||||  || | |||| ||||||||||||||||||    
T  35431196 acggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 26915297 - 26915231
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagaca 145  Q
    ||||||||| | |||||||||||||||| ||| |||||| ||| | |||||||||||||||| ||||    
T  26915297 cacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggaca 26915231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 1676714 - 1676771
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||||||||||| |||||||||||  || | |||| ||||||||||||||||||    
T  1676714 cacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 13845217 - 13845297
Alignment:
Q  60 cacggacactgaacactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||| |||||| | |||  |||||||||||||||||||| || ||| |  ||| |||||||||||||||| |||||    
T  13845217 cacggacaccgaacaccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtc 13845297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 39820436 - 39820488
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||||||||||||||| || ||| | |||| ||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 14513226 - 14513147
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtcagacattgatgcgtgtccgacac 163  Q
    |||||||||||||||||| |||| |||||  ||| |||||| | | ||||||||||||||||  || || ||||||||||    
T  14513226 ataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtcagacaccgacgcatgtccgacac 14513147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 28883935 - 28883880
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtc 134  Q
    |||| ||||||||||||||||||||||| ||||| || | ||||||||||| ||||    
T  28883935 cacgaataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 29198530 - 29198492
Alignment:
Q  85 taataatttgagaaaatgacatgattcaatgtattcata 123  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcata 29198492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 3508058 - 3508103
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgt 128  Q
    ||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgtgt 3508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 16869772 - 16869711
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    |||||| |||||||| |||||||||||| ||||| | || |||| |||||||||| ||||||    
T  16869772 cacggaaaataatttaagaaaatgacataattcactataatcattggtgtcgtgttggtgtc 16869711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 34201098 - 34201065
Alignment:
Q  84 ataataatttgagaaaatgacatgattcaatgta 117  Q
    ||||||||||||||||||||||| ||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgta 34201065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 13009550 - 13009490
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgt 139  Q
    ||||||||||||||||||||||  | || ||| | |||| ||||| |||||||||||||||    
T  13009550 cacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgt 13009490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 8109 - 8052
Alignment:
Q  80 acggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggt 137  Q
    ||||||||||||||||||||||||||| ||||| ||||  ||||||| ||||||||||    
T  8109 acggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggt 8052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 225346 - 225264
Alignment:
Q  59 acacggacactga-acactggcacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcggtgtc 140  Q
    ||||||||||||| || | | ||| |||||||||||||||||||||||| || ||||||| | ||| ||||||||| ||||||    
T  225346 acacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttggtgtc 225264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 1951 - 2008
Alignment:
Q  79 cacggataataatttgagaaaatgacatgattcaatgtattcataggtgtcgtgtcgg 136  Q
    |||||||||||||||| |||||||||||  || | |||| ||||||||||||||||||    
T  1951 cacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 26004 - 26050
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatgtattcataggtgtc 129  Q
    ||||||||| |||||||||||||||||||| || | |||||||||||    
T  26004 gataataatgtgagaaaatgacatgattcagtgcaatcataggtgtc 26050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 7696 - 7728
Alignment:
Q  83 gataataatttgagaaaatgacatgattcaatg 115  Q
    |||||||||||||||||||||||| ||||||||    
T  7696 gataataatttgagaaaatgacataattcaatg 7728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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