View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_high_2 (Length: 400)

Name: NF10111_high_2
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_high_2
NF10111_high_2
[»] chr1 (2 HSPs)
chr1 (17-389)||(22902444-22902816)
chr1 (133-280)||(46885989-46886135)
[»] chr2 (3 HSPs)
chr2 (18-389)||(26662189-26662557)
chr2 (133-201)||(26666243-26666311)
chr2 (133-202)||(26662004-26662073)
[»] chr6 (1 HSPs)
chr6 (24-194)||(19702429-19702600)
[»] chr8 (4 HSPs)
chr8 (194-389)||(32716855-32717050)
chr8 (194-389)||(10638561-10638756)
chr8 (17-70)||(10638219-10638272)
chr8 (18-70)||(32717339-32717391)
[»] scaffold0586 (2 HSPs)
scaffold0586 (195-389)||(2982-3176)
scaffold0586 (18-110)||(10174-10266)
[»] chr7 (3 HSPs)
chr7 (36-108)||(38935513-38935585)
chr7 (294-389)||(13330536-13330631)
chr7 (294-389)||(13341451-13341546)
[»] chr5 (1 HSPs)
chr5 (294-389)||(5670984-5671079)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 22902444 - 22902816
Alignment:
Q  17 acttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttggcattc 116  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22902444 acttagcaatttgatagtgaaaatctgtaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgacattc 22902543  T
Q  117 ttttgttttttcgatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgatagtgctc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  22902544 ttttgttttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgtttgtgctc 22902643  T
Q  217 tgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgactcatttgattgaaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| |||||||| |||||    
T  22902644 tgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaat 22902743  T
Q  317 acgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||||| ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  22902744 acgtgaaaagaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 22902816  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 46886135 - 46885989
Alignment:
Q  133 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgatagtgctctgtttagaatgttata 232  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||| | || |||||||||||||||||||    
T  46886135 atgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt-ggatgtttgtcctctgtttagaatgttata 46886037  T
Q  233 tatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46886036 tatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaa 46885989  T

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Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 26662189 - 26662557
Alignment:
Q  18 cttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttggcattct 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||    
T  26662189 cttagtaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatttgacattct 26662288  T
Q  118 tttgttttttcgatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgatagtgctct 217  Q
    |||||||   | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  26662289 tttgttt---ccatcatgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatatttggatgtttgtgctct 26662385  T
Q  218 gtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgactcatttgattgaaata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| |||||||| ||||||    
T  26662386 gtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaata 26662485  T
Q  318 cgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    ||||||| ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  26662486 cgtgaaaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 26662557  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 26666243 - 26666311
Alignment:
Q  133 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatt 201  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26666243 atgatgttcccaagtgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatatt 26666311  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 26662004 - 26662073
Alignment:
Q  133 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtattt 202  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26662004 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcattatatattt 26662073  T

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Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 19702429 - 19702600
Alignment:
Q  24 aacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttggc-attcttttgt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19702429 aacttgatagtgaaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatttggcaattcttttgt 19702528  T
Q  123 tttttcgatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcact 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  19702529 tttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 389
Target Start/End: Complemental strand, 32717050 - 32716855
Alignment:
Q  194 tatgtatttggatgatagtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaannnnnnnnnnnna 293  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  32717050 tatgtatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaattttttgttttta 32716951  T
Q  294 atcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||||| |||||||| ||||||||||||| ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  32716950 atcatgacacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 32716855  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 194 - 389
Target Start/End: Original strand, 10638561 - 10638756
Alignment:
Q  194 tatgtatttggatgatagtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaannnnnnnnnnnna 293  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  10638561 tatgtatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaattttttgttttta 10638660  T
Q  294 atcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||| | |||||||| ||||||||||||| ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  10638661 atcatgtcacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 10638756  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 10638219 - 10638272
Alignment:
Q  17 acttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaa 70  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10638219 acttagcaatttgatagtgaaaatctgcaagatgtggtacataatctaagtcaa 10638272  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 32717391 - 32717339
Alignment:
Q  18 cttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaa 70  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  32717391 cttaacaacttgatagtgagaatatgcaagatgtggtacataatctaagtcaa 32717339  T

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Target: scaffold0586 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 2982 - 3176
Alignment:
Q  195 atgtatttggatgatagtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaa 294  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  2982 atgtatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattatgatgtgcagcaattttttgtttttaa 3081  T
Q  295 tcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    ||||||| |||||||| ||||||||||||| ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  3082 tcatgacacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 3176  T

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Target: scaffold0586; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 10174 - 10266
Alignment:
Q  18 cttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10174 cttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttg 10266  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 38935513 - 38935585
Alignment:
Q  36 aaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||    
T  38935513 aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt 38935585  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 13330631 - 13330536
Alignment:
Q  294 atcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||||| |||||||| ||||| ||||| | ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  13330631 atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 13330536  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 13341546 - 13341451
Alignment:
Q  294 atcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||||| |||||||| ||||| ||||| | ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  13341546 atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 13341451  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 5671079 - 5670984
Alignment:
Q  294 atcatgactcatttgattgaaatacgtgaaatgaagnnnnnnnttatagcaatgtttatgatatatattaagatgtttatttactttatgttgatg 389  Q
    |||||||| |||||||| ||||| ||||| | ||||       |||||||||||||||||||||||||  ||||||| | ||||||||||||||||    
T  5671079 atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatg 5670984  T

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