View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_high_20 (Length: 239)
Name: NF10111_high_20
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28959067 - 28959290
Alignment:
| Q |
1 |
agatccttgctgcgacttatatcacagtgcattacaacaaataactgaaattattaaagaaaacacagcaaagaaaaagaaaagtctctgatgtctgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28959067 |
agatccttgctgcgacttatatcacagtgcattacaacaaataactgaacttgttaaagaaaacacagcaaagaaaaagaaaagtctctgatgtctgaga |
28959166 |
T |
|
| Q |
101 |
tgctagtgaaaattcatcaaaaaacttgcattccattttggtcatgatatatagttgtgaatcaatatacatacctctaaatacatacttgaatgatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28959167 |
tgctagtgaaaattcatcaaaaaacttgcattccattttaattttgatatatagttctgaatcaatatacatacctctaaatacatacttgaatgatttc |
28959266 |
T |
|
| Q |
201 |
tatcaaatcataaatgaggtattt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28959267 |
tatcaaatcataaatgaggtattt |
28959290 |
T |
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