View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_1 (Length: 839)

Name: NF10111_low_1
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_1
NF10111_low_1
[»] chr6 (2 HSPs)
chr6 (141-504)||(10681758-10682120)
chr6 (18-123)||(10681673-10681778)
[»] chr3 (1 HSPs)
chr3 (72-300)||(50311849-50312077)
[»] chr1 (3 HSPs)
chr1 (170-273)||(35069086-35069189)
chr1 (209-276)||(33890484-33890551)
chr1 (209-276)||(33953699-33953766)
[»] chr8 (3 HSPs)
chr8 (173-269)||(7718903-7719003)
chr8 (209-270)||(12838951-12839012)
chr8 (75-117)||(29001474-29001516)
[»] chr4 (5 HSPs)
chr4 (170-271)||(28542685-28542785)
chr4 (203-274)||(3001011-3001082)
chr4 (216-274)||(5905820-5905878)
chr4 (212-274)||(8714272-8714334)
chr4 (69-114)||(1957954-1957999)
[»] chr7 (5 HSPs)
chr7 (228-274)||(19736442-19736488)
chr7 (209-271)||(25654452-25654514)
chr7 (200-269)||(4897995-4898064)
chr7 (212-273)||(7606567-7606628)
chr7 (213-270)||(42992941-42992998)
[»] chr5 (3 HSPs)
chr5 (72-125)||(18443866-18443919)
chr5 (209-272)||(35677463-35677526)
chr5 (200-274)||(8033761-8033835)
[»] chr2 (1 HSPs)
chr2 (233-274)||(3048280-3048321)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 141 - 504
Target Start/End: Original strand, 10681758 - 10682120
Alignment:
Q  141 tatatcaatcaccaagaacacaactaaccaactacatgcatgaatttcaaattcattaatcttaattgttcatgtattaaatataaatattagagtcata 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10681758 tatatcaatcaccaagaacacaactaaccaactacatgcatgaatttcaaatccattaatcttaattgttcatgtattaaatataaatattagagtcata 10681857  T
Q  241 catgtcgtgtgataataaatattatatatgttagcttggaaataaaaattgattgtaaataaatatagagtagactaagctagaccactcttgagagact 340  Q
    |||  ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10681858 cataacgtttgataatgaatattatatatgttagct-ggaaataaaaattgattgtaaataaatatagagtagactaagctagaccactcttgagagact 10681956  T
Q  341 agtttcaaatagttcaaacgatctcatattagcataaactcaagtttaggtgaggagtacaaagtagttcatttggtttaaacggtttgatgttcttttt 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10681957 agtttcaaatagttcaaacgatctcatattagcataaactcaagtttaggtgaggagtacaaagtagttcatttggtttaaacggttcgatgttcttttt 10682056  T
Q  441 cacttgaaccaatttttattgtttattaagtccatatatatgacttaagtccatgcattaacca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682057 cacttgaaccaatttttattgtttattaagtccatatatatgacttaagtccatgcattaacca 10682120  T

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Target: chr6; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 10681673 - 10681778
Alignment:
Q  18 agaataagagaaaatcaattgtgtattatacataattgattttttgtttcattctcatatattaaatatgactctagaagtcatgtatatcaatcaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10681673 agaataagagaaaatcaattgtgtattatacataattgattttttatttcattctcatatattaaatatgactctagaagtcatgtatatcaatcaccaa 10681772  T
Q  118 aaacac 123  Q
     |||||    
T  10681773 gaacac 10681778  T

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Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 72 - 300
Target Start/End: Original strand, 50311849 - 50312077
Alignment:
Q  72 tcatatattaaatatgactctagaagtcatgtatatcaatcaccaaaaacaccaccaatcaatgacatttatatcaatcaccaagaacacaactaaccaa 171  Q
    |||| ||||||||||||||||   ||||||| |||||||| || ||| | || | |||  ||  ||||  |||||||||||||||||||| |||||||||    
T  50311849 tcatgtattaaatatgactcttagagtcatgcatatcaataacaaaatatacaatcaactaactacatgcatatcaatcaccaagaacaccactaaccaa 50311948  T
Q  172 ctacatgcatgaatttcaaattcattaatcttaattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgt 271  Q
    ||||||||||||||||  |||  |||  |  ||||  || ||||||||||||| |||  ||||||  |  ||||| ||| ||||| ||||||||||||||    
T  50311949 ctacatgcatgaattttgaatctattctttctaatgtttaatgtattaaatatgaatcgtagagtagtgtatgtcatgtaataatgaatattatatatgt 50312048  T
Q  272 tagcttggaaataaaaattgattgtaaat 300  Q
    ||||| | ||  ||||| |||||||||||    
T  50312049 tagctagaaacaaaaaaatgattgtaaat 50312077  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 35069189 - 35069086
Alignment:
Q  170 aactacatgcatgaatttcaaattcattaatcttaattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatat 269  Q
    ||||| || ||||||||| |||| ||||| |||||||| |||||||||||||||| ||||||| ||||||| ||||| | | | |||  |||||||||||    
T  35069189 aactagatacatgaattttaaatccattattcttaattcttcatgtattaaatatgaatattacagtcatatatgtcatatcaaaatggatattatatat 35069090  T
Q  270 gtta 273  Q
    ||||    
T  35069089 gtta 35069086  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 33890551 - 33890484
Alignment:
Q  209 ttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttagct 276  Q
    ||||||||||||||||  || || |||||||||||||   ||||| ||||||||||||||| ||||||    
T  33890551 ttcatgtattaaatatgtattttggagtcatacatgtgacgtgatgataaatattatatatattagct 33890484  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 33953699 - 33953766
Alignment:
Q  209 ttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttagct 276  Q
    ||||||||||||||||  || || |||||||||||||   ||||| ||||||||||||||| ||||||    
T  33953699 ttcatgtattaaatatgtattttggagtcatacatgtgacgtgatgataaatattatatatattagct 33953766  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 7719003 - 7718903
Alignment:
Q  173 tacatgcatgaatttcaaattcattaatcttaattgttcatgtattaaatataaatattagagtcatacatg----tcgtgtgataataaatattatata 268  Q
    ||||||||||||||| |||| |||   |  ||||| |||||||||||||||| |||||||||||||||||||    || ||||||||| |||||||||||    
T  7719003 tacatgcatgaattttaaatacatattttctaatttttcatgtattaaatatgaatattagagtcatacatgcatctcatgtgataatgaatattatata 7718904  T
Q  269 t 269  Q
    |    
T  7718903 t 7718903  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 12839012 - 12838951
Alignment:
Q  209 ttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatg 270  Q
    |||||||||||||||| | | || |||||| ||||||| ||||| |||||||||||||||||    
T  12839012 ttcatgtattaaatatgagtctttgagtcacacatgtcatgtgagaataaatattatatatg 12838951  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 29001474 - 29001516
Alignment:
Q  75 tatattaaatatgactctagaagtcatgtatatcaatcaccaa 117  Q
    ||||||||||| |||||| | ||||||||||||||||||||||    
T  29001474 tatattaaatacgactcttgtagtcatgtatatcaatcaccaa 29001516  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 28542785 - 28542685
Alignment:
Q  170 aactacatgcatgaatttcaaattcattaatcttaattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatat 269  Q
    |||||||||||||  |||  ||| ||||| |  ||||| |||||||||||||||| ||| ||| ||||||||||||| | ||||||| ||||||||||||    
T  28542785 aactacatgcatgtgttttgaatacattatttataattcttcatgtattaaatatgaat-ttaaagtcatacatgtcatatgataatgaatattatatat 28542687  T
Q  270 gt 271  Q
    ||    
T  28542686 gt 28542685  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 3001011 - 3001082
Alignment:
Q  203 taattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    ||||| || ||||||||||||| | | || ||||||||||| || ||||||||| |||||||||||||||||    
T  3001011 taattttttatgtattaaatatgacttttggagtcatacatctcatgtgataatgaatattatatatgttag 3001082  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 5905878 - 5905820
Alignment:
Q  216 attaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    ||||||||||||| ||||||||||||||||  | ||||||| |||||||||| ||||||    
T  5905878 attaaatataaatcttagagtcatacatgtgatctgataatgaatattatatgtgttag 5905820  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 8714272 - 8714334
Alignment:
Q  212 atgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    |||||||||||||  ||||| || |||| || ||| ||||| |||||||||||||||||||||    
T  8714272 atgtattaaatatgtatatttgaatcatgcaagtcatgtgagaataaatattatatatgttag 8714334  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 1957954 - 1957999
Alignment:
Q  69 ttctcatatattaaatatgactctagaagtcatgtatatcaatcac 114  Q
    ||||||||||||||||||||||||  |||||||  |||||||||||    
T  1957954 ttctcatatattaaatatgactcttaaagtcatacatatcaatcac 1957999  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 19736442 - 19736488
Alignment:
Q  228 tattagagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||    
T  19736442 tatttgagtcatacatgtcatgtgagaataaatattatatatgttag 19736488  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 25654514 - 25654452
Alignment:
Q  209 ttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgt 271  Q
    |||||||||||||||| | |||| ||||||||||||||  | || ||| ||||||||||||||    
T  25654514 ttcatgtattaaatatgattatttgagtcatacatgtcacgcgagaatgaatattatatatgt 25654452  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 4898064 - 4897995
Alignment:
Q  200 tcttaattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatat 269  Q
    ||||||||||||||| ||||||||| | | || ||||||| |||| | ||||| ||| ||||||||||||    
T  4898064 tcttaattgttcatgcattaaatatcactctttgagtcatgcatgacatgtgaaaatgaatattatatat 4897995  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 7606628 - 7606567
Alignment:
Q  212 atgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgtta 273  Q
    ||||||||||||| | | ||| |||||| |||||| | ||| ||||||||||||||||||||    
T  7606628 atgtattaaatatgactcttatagtcatgcatgtcatatgagaataaatattatatatgtta 7606567  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 42992941 - 42992998
Alignment:
Q  213 tgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatg 270  Q
    |||||||||||||| | || ||||||| ||||||  |||| |||||||||||||||||    
T  42992941 tgtattaaatataactctttgagtcatgcatgtcacgtgagaataaatattatatatg 42992998  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 18443866 - 18443919
Alignment:
Q  72 tcatatattaaatatgactctagaagtcatgtatatcaatcaccaaaaacacca 125  Q
    |||| |||||||||||||| | ||||||||||||||||||||| || |||||||    
T  18443866 tcatgtattaaatatgacttttgaagtcatgtatatcaatcactaagaacacca 18443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 35677463 - 35677526
Alignment:
Q  209 ttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgtt 272  Q
    |||||||||||||||| ||| ||  |||||| |||||| ||||| |||| ||||||||||||||    
T  35677463 ttcatgtattaaatattaatttttaagtcatgcatgtcatgtgagaatacatattatatatgtt 35677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 8033761 - 8033835
Alignment:
Q  200 tcttaattgttcatgtattaaatataaatattagagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    |||||||| ||||||||||||| || | | || ||||||| |||| | ||||| |||||||||||||||| ||||    
T  8033761 tcttaatttttcatgtattaaaaattactctttgagtcatgcatgccatgtgaaaataaatattatatatattag 8033835  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 3048280 - 3048321
Alignment:
Q  233 gagtcatacatgtcgtgtgataataaatattatatatgttag 274  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  3048280 gagtcatacatgtcatgtgagaataaatattatatatgttag 3048321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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