View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_10 (Length: 407)
Name: NF10111_low_10
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 395
Target Start/End: Complemental strand, 37789634 - 37789263
Alignment:
| Q |
24 |
atagattaaacaaaaagagaagaacatttgctatttaagagaggcaatcgatgagaagggcaagccatggtagcaaaatggaataaaagnnnnnnnntca |
123 |
Q |
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| T |
37789634 |
atagattaaacaaaaagagaagaacatttgctatttaagagaggcaagcgatgagaagggcaagccatggtagcaaaatggaataaaagaaaaaaaatca |
37789535 |
T |
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| Q |
124 |
ttgttggctgataacattttcgtgttgggttataatcatatcgtaatgtgatttgaaatgtttcaataaagtatgttaatttattctctttgcggtgcgt |
223 |
Q |
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| T |
37789534 |
ttgttggctgataacattttcgtgttgggttataatcatatcgtaatgtgatttgaaatgtttcaataaagtatgttaatttattctctttgcggtgcgt |
37789435 |
T |
|
| Q |
224 |
tgtttgtgttcataaataattcatggcttgtacggcttttttacaacaattaagatatgattttgccatgatagtgttgataagttgatacctattaccc |
323 |
Q |
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| T |
37789434 |
tgtttgtgttcataaataattcatggcttgtacggcttttttacaacaattaagatatgattttgccatgatagtgttgataagttgatacctattaccc |
37789335 |
T |
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| Q |
324 |
agtttttcatgaagtttgatgataagctcttcctcttgttgattaaagttccctcttttgacatctggcctt |
395 |
Q |
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| T |
37789334 |
agtttttcatgaagtttgatgataagctcttcctcttgttgattgaagttccctcttttgacatctggcctt |
37789263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 37808008 - 37807925
Alignment:
| Q |
312 |
tacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattaaagttccctcttttgacatctggcctt |
395 |
Q |
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| T |
37808008 |
tacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggcctt |
37807925 |
T |
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