View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_12 (Length: 393)
Name: NF10111_low_12
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 25377870 - 25377506
Alignment:
| Q |
18 |
attctgagatgcaataacaaaaagaagtgtggagatggcattgtaaaatattatagataacagatgataaaaaatcaatcataaatacactacataattt |
117 |
Q |
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| T |
25377870 |
attctgagatgcaataacaaaatgaagtgtggagatggcattgtaaaatattatagataatagatgataaaaaatcaatcataaatacactacataattt |
25377771 |
T |
|
| Q |
118 |
ccaaatgtaagaattgaacaattttgcattattttaatactccaatgtaactaaaacagcaagtgacaacacaagaattgttcttcttcaattacatgtt |
217 |
Q |
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| T |
25377770 |
ccaaatgtaagaattgaacaattttgcattattttaatactccaatgtaactaacacagcaagtgacaacacaagaattgttcttcttcaattacatgtt |
25377671 |
T |
|
| Q |
218 |
tttagcaaattcaaaagaaaccattaactaagacttaaatgatcttaacgaagaaaatgtcacattctagtcaatcccatcttcaattgtagcagccacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
25377670 |
tttagcaaattcaaaagaaaccattaactaagacttaaatgatcttaacgaagaaaatatcacattctagtcaataccatcttcaattgtagcagccacc |
25377571 |
T |
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| Q |
318 |
ttctatacctgtctttccatattgtccacaagtccatacaagaagtaatatctgcaaaagttcat |
382 |
Q |
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| T |
25377570 |
ttctatacctgtctttccatattgtccacaagtccatacaagaagtaatatctgcaaaagttcat |
25377506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 838898 - 838797
Alignment:
| Q |
22 |
tgagatgcaataacaaaaagaagtgtggagatggcattgtaaaatattatagataacagatgataaaaaatcaatcataaatacactacataatttccaa |
121 |
Q |
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| T |
838898 |
tgagatgcagtaacaaaaagaagtgtggagatggcattgtaaaatattatagataacagataataaaaaatcaatcattcatacactacataatttccaa |
838799 |
T |
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| Q |
122 |
at |
123 |
Q |
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|| |
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| T |
838798 |
at |
838797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 1110739 - 1110843
Alignment:
| Q |
277 |
tcacattctagtcaatcccatcttcaattgtagcagccaccttctatacctgtctttccatattgtccacaagtccatacaagaagtaatatctgcaaaa |
376 |
Q |
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||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1110739 |
tcacattctagccaaaaacatcttcaattgcagcagccaccttctatacttgtctttccatagtgtccacaagtccatacaagaagtaatatctgcaaaa |
1110838 |
T |
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| Q |
377 |
gttca |
381 |
Q |
| |
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||||| |
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| T |
1110839 |
gttca |
1110843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 1110600 - 1110663
Alignment:
| Q |
129 |
aattgaacaattttgcattattttaatactccaatgtaactaaaacagcaagtgacaacacaag |
192 |
Q |
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| T |
1110600 |
aattgaacaattttgcattattttgatactccaatgtaactatcacagcaagtgacaaaacaag |
1110663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1110516 - 1110562
Alignment:
| Q |
84 |
ataaaaaatcaatcataaatacactacataatttccaaatgtaagaa |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1110516 |
ataaaaaatcaatcataaatacactacataatttccaaaagtaagaa |
1110562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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