View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_13 (Length: 391)
Name: NF10111_low_13
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Complemental strand, 32629640 - 32629271
Alignment:
| Q |
4 |
tacaaagataggcttcaattttatgtttggacatttgatgtatttctcttttgatgttccgatgtgggacatcaaaactactaccatagtatatatgtaa |
103 |
Q |
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| T |
32629640 |
tacaaggataggcttcaattttatgtttggacatttgatgtatttctcttttgatgttccgatgtgggacatcaaaactactaccatagtatat--gtaa |
32629543 |
T |
|
| Q |
104 |
caatgtgagaatgtacacctttttcttctgtcatattctttctacagtaatctaagatcatccttttgtaaattctgctatagtaaattctgctatgtta |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
32629542 |
caatgtgagaatgtccacctttttcttctgtcatattctttctacagtaatctaagatcatcctttagtaaattctgctatagtaaattctgctatctta |
32629443 |
T |
|
| Q |
204 |
tgcaacattcttcatcattgaggaaaccttaaacactaccttaataatactaaatattgcattatgtcaaaagaacattagtcatcccgaacgcacatgt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32629442 |
tgcaacattcttcatcattgaggaaaccttaaacactaccttaataatactaaatattgcattatgtcaaaagaacattagtcatcccgaatgcacatgt |
32629343 |
T |
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| Q |
304 |
caatccctaccttatcgagaagaagagaatgtcacatctacattacactcataccttcctggtgcaagtttc |
375 |
Q |
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| T |
32629342 |
caatccctaccttatcgagaggaagagaatgtcacatctacattacactcataccttcctggtgcaagtttc |
32629271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 32579028 - 32578917
Alignment:
| Q |
110 |
gagaatgtacacctttttcttctgtcatattctttctacagtaatctaagatcatccttttgtaaattctgctatagtaaattctgctatgttatgcaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| || | |||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
32579028 |
gagaatgtacacctttttcttctgtcatattctttcttcaacattctaagatcaccctt---------------tagtaaattctgatatgttatgcaac |
32578944 |
T |
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| Q |
210 |
attcttcatcattgaggaaaccttaaa |
236 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
32578943 |
attctttatcattgaggaaaccttaaa |
32578917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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