View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_14 (Length: 384)
Name: NF10111_low_14
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 40531979 - 40531798
Alignment:
| Q |
7 |
ggagcacagacgaggtgatgatatggtaatttacttatta---aagtgtaattaatatatgctttaactaaacttttataatgttggatacgacatatac |
103 |
Q |
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| T |
40531979 |
ggagcactgacgaggtgatgatatggtaatttacttattattaaagtgtaattaatatatgctttaactaaacttttataatgttggatatgacatatac |
40531880 |
T |
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| Q |
104 |
ttagtctatcaattaaatggatgatttgaataaataaataaaataaattatgaactagtattcaatgcacttggtgaaaact |
185 |
Q |
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| T |
40531879 |
ttagtctatcaattaaatggatgatttgaataaataaataaaataaattatgaactagtattcaatgcacttggtgaaaact |
40531798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 215 - 369
Target Start/End: Complemental strand, 40531803 - 40531649
Alignment:
| Q |
215 |
aaaacaaaagatctatagcaggtgaaattggagagtgtacggatggatggtatgtgggatttggaggtgcagtttaattagggttgaatacattgaacgt |
314 |
Q |
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| T |
40531803 |
aaaactaaagatctatagcagatgaaatgggagagtgtacggatggatggtatgtgggatttggaggtgcagtttaattagggttgaatacattgaacgt |
40531704 |
T |
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| Q |
315 |
gaagtacatgcatagagtttcatttgttatcaaaacttccattatttttgttttt |
369 |
Q |
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| T |
40531703 |
gaagtacatgcatagagtttcatttgttatcaaaacttccattatttttgttttt |
40531649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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