View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_15 (Length: 379)
Name: NF10111_low_15
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 60 - 360
Target Start/End: Complemental strand, 52611675 - 52611375
Alignment:
| Q |
60 |
acatgcaaatagttgaaaatcacatagattaagaaattgattagagagtgaccttggaagatcacatccatgaggtttccaacgccatttggtataatga |
159 |
Q |
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| T |
52611675 |
acatgcaaatagttgaaaatcacatagattaagaaattgattagagaatgaccttggaagatcacatccatgaggtttccagcgccatttggtataacga |
52611576 |
T |
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| Q |
160 |
gtatcatttcttccattgattttgcaatcataagcttcatcaacgtaaggacaagaacctggctcataaatcggataatctccatcctctacccaagttc |
259 |
Q |
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| T |
52611575 |
gtatcatttcttccattgattttgcaatcataagcttcatcaacgtaaggacaagaacctggctcataaatcggataatctccatcctctacccaagttc |
52611476 |
T |
|
| Q |
260 |
cattgtataaatcgcattccttcaaagctagaatcgcatcatcaacctcgtccgtacgagtatcaacaatgggttcaacagattcatgatcatcgacggt |
359 |
Q |
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| T |
52611475 |
cattgtataaatcgcattccttcaaagctagaatcgcatcatcaacctcgtccgtacgagtatcaaaaatggattcaacagattcatgatcatcgacggt |
52611376 |
T |
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| Q |
360 |
g |
360 |
Q |
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| T |
52611375 |
g |
52611375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 52611704 - 52611676
Alignment:
| Q |
17 |
acatcacattgaacaaatgaactaatcaa |
45 |
Q |
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| T |
52611704 |
acatcacattgaacaaatgaactaatcaa |
52611676 |
T |
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