View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_18 (Length: 332)
Name: NF10111_low_18
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32844275 - 32844511
Alignment:
| Q |
1 |
agctatcatgcattagatacaccttgaataatgttcggagataagtccttgtccttctcataaggactcgttcaaaaccaacctttctaaccaagggtta |
100 |
Q |
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| T |
32844275 |
agctatcatgcattagatacaccttgaataatgttcggagataagtccttgtccttctcataaggactcgttcaaaaccaacccttctaaccaagggcta |
32844374 |
T |
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| Q |
101 |
aaaatcactctccacattactgtctcttattaaccaatcatttannnnnnnnacgggaatattaacccatcatctagtactcaaataacaccatgtataa |
200 |
Q |
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| T |
32844375 |
aaaatcactctccacattactgtctcttattaaccaatcatttagtttttttacgggaatattaacccatcatctagtactcaaataacaccatgtataa |
32844474 |
T |
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| Q |
201 |
catatcttatcgattctctctccatattatgtccctt |
237 |
Q |
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| T |
32844475 |
catatcttatcgattctctatccatattatgtccctt |
32844511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 27744573 - 27744705
Alignment:
| Q |
8 |
atgcattagatacaccttgaataatgttcggagataagtccttgtccttctcataaggactcgttcaaaaccaacctttctaaccaagggttaaaaatca |
107 |
Q |
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| T |
27744573 |
atgcattagatgcaccttgaataatgtttggacataaatcattgtctttctcataaggactcgctc-aaaccaacctttttcaccaagggctaaaaatca |
27744671 |
T |
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| Q |
108 |
ctctccacattactgtctcttattaaccaatcat |
141 |
Q |
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| T |
27744672 |
acctcaacatcactgttttatattaacccatcat |
27744705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 311
Target Start/End: Original strand, 27744691 - 27744846
Alignment:
| Q |
159 |
atattaacccatcatctagtactcaaataacaccatgtataacatatcttatcgat------tctctctccatattatgtcccttaaaattctctctnnn |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| | | || || |||||||||| ||| ||||||||||||| |||| |
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| T |
27744691 |
atattaacccatcatctagtactcaaataacaccatgcataacatgtttcctcaattatctctctctctccacattttgtcccttaaaat--cctctaaa |
27744788 |
T |
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| Q |
253 |
nnnntagtaaagtgaagggagaaatgcaatcaccactttactaaccttcattcacccac |
311 |
Q |
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|||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
27744789 |
aaaatagtaaagtgaagggagaaaagtaa-caccactttactaaccttcattcacccac |
27744846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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