View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10111_low_19 (Length: 328)
Name: NF10111_low_19
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 11877588 - 11877896
Alignment:
| Q |
1 |
ggctataaaaagaagagaagggagaacaaaatatatttttcctgctttttagagattccacaatttttacatgtcatcctactctagtatgttaatctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11877588 |
ggctataaaaagaagagaagggagaacaaaatatatgtttcctgctttttagagattccacaatttttacatgtcatcctactctagtatgttaatctta |
11877687 |
T |
|
| Q |
101 |
tcttacaataaatgcaataaagtgcaaaataaaagacactcattagatgtcgctagtgttaattttttaatctaagaacttgattttatatttctccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11877688 |
tcttacaataaatgcaataaagtgcaaaataaaagacactcattagatgtcgctagtgttaattttttaatctaagaacttgattttatatttctccaat |
11877787 |
T |
|
| Q |
201 |
gagcaaaatataagcatagttcgtaaaaagactctttggaaaaacacttttcctggtgttannnnnnnnnnnntttgcatatttcaagatatgcaaattt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11877788 |
gagcaaaatataagcacagttcgtaaaaagactctttggaaaaacacttttcctggtgtta--atatatatattttgcatatttcaagatatgcaaattt |
11877885 |
T |
|
| Q |
301 |
gatcttcgtaa |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
11877886 |
gatcttcgtaa |
11877896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University