View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10111_low_2 (Length: 667)
Name: NF10111_low_2
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 116 - 602
Target Start/End: Original strand, 53032977 - 53033464
Alignment:
| Q |
116 |
tatatgtatagattttgtgttcatgattcttcctcctttcttatgtagagtcattccaaagacacttatgctaagagaggtacgtactttaatcactacc |
215 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53032977 |
tatatgtatacattttgtgctcatgattcttcctactttcttatgtagagtcattccaaagacacttatgctaagagaggtacgtactttaatcactacc |
53033076 |
T |
|
| Q |
216 |
actagtatatatatttggattttacaatactactacaacgattaaatgtgtatttttagttgaattaattaattaagtatgattagttggttaatttaga |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033077 |
actagtatatatatttggattatacaatactactacaacgattaaatgtgtatttttagttgaattaattaattaagtatgattagttggttaatttaga |
53033176 |
T |
|
| Q |
316 |
taactggagaaacagtgggagaagtaagagctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccagg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033177 |
taactggagaaacagtgggagaagtaagagctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccagg |
53033276 |
T |
|
| Q |
416 |
tttgtccaacttttatatatgcacacatcattatcacctcattcaattcaatttattctcctttacctctataataataattgtaattaattaagaagtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033277 |
tttgtccaacttttatatatgcacacatcattatcacctcattcaattcaatttattctcctttacctctataataataattgtaattaattaagaagtt |
53033376 |
T |
|
| Q |
516 |
aaggtgtttaactatcatcgttgtttccttcaaaagaaaaatatatgcaagacac-tttggcacttgctagtaactttcccaagataa |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53033377 |
aaggtgtttaactatcatcgttgtttccttcaaaagaaaaatatatgcaagacacttttggcacttgctagtaactttcccaagataa |
53033464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 53032848 - 53032960
Alignment:
| Q |
13 |
agcataggattgatgggtcgtatctcacaagttgtctatgatggtggacgccacgtcttagggtaccctcctttctttttcttcaattccttattcttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53032848 |
agcataggattgatgggtcgtatctcacaagttgtctatgatggtggacgccacgtcttagggtaccctcctttctttttcttcaattccttattcttct |
53032947 |
T |
|
| Q |
113 |
atctatatgtata |
125 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
53032948 |
atctatatatata |
53032960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 7884778 - 7884850
Alignment:
| Q |
345 |
gctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccaggtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
7884778 |
gctgtatcggacatgcaccaacgcaaggccgaaatggctcgacaggccgatgcttttattgccttgccaggtt |
7884850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University