View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_22 (Length: 303)
Name: NF10111_low_22
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 36907148 - 36906872
Alignment:
| Q |
19 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36907148 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
36907049 |
T |
|
| Q |
119 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36907048 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
36906949 |
T |
|
| Q |
219 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36906948 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
36906872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 22770142 - 22769866
Alignment:
| Q |
19 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22770142 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
22770043 |
T |
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| Q |
119 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22770042 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
22769943 |
T |
|
| Q |
219 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22769942 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
22769866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 23075934 - 23075658
Alignment:
| Q |
19 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23075934 |
aaagggcgagtggagcttattcttaagtatattgaggatgctgatcttcgccattggagcttgcctgacattaaaccctttaacattggactgagtgaat |
23075835 |
T |
|
| Q |
119 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23075834 |
ggcggtcgaggtttagctgcatttctaacccatacatgtttaagcaggtatgactgattatccttgggtgttgcttttctgattatccttgatgttgttt |
23075735 |
T |
|
| Q |
219 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23075734 |
aagcaggtatttaatttaagttgacacaaatacaatggattaagtaataaatttgtgtatatatacgatttcttctc |
23075658 |
T |
|
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