View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_24 (Length: 299)

Name: NF10111_low_24
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_24
NF10111_low_24
[»] chr5 (6 HSPs)
chr5 (1-283)||(35754164-35754446)
chr5 (158-283)||(35406099-35406224)
chr5 (14-283)||(35366223-35366492)
chr5 (158-283)||(35375913-35376038)
chr5 (157-252)||(35436519-35436614)
chr5 (158-283)||(35423169-35423297)
[»] chr7 (1 HSPs)
chr7 (37-283)||(29623682-29623928)
[»] chr1 (4 HSPs)
chr1 (140-283)||(10410532-10410675)
chr1 (158-283)||(10416245-10416370)
chr1 (38-283)||(10421132-10421376)
chr1 (1-75)||(10416456-10416530)
[»] chr2 (3 HSPs)
chr2 (158-283)||(30662529-30662654)
chr2 (171-283)||(30634813-30634925)
chr2 (158-283)||(30671209-30671334)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 35754164 - 35754446
Alignment:
Q  1 ttcttgcttgaccttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctctttaagaaacctgaatctcttagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754164 ttcttgcttgaccttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctctttaagaaacctgaatctcttagac 35754263  T
Q  101 ctttctaacaacaacttatctgggacaatccctcatgagctagaaaacctgaaactgttgaatactttgaacttgtcttttaacgatctctacggcgagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35754264 ctttctaacaacaacttatctgggacaatccctcatgagctagaaaacctgaaactgttgaatactttgaacctgtcttttaacgatctctacggcgagg 35754363  T
Q  201 ttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataagaacttatgtgggggaatacctcaattg 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754364 ttcccaaagaaggtgtattcagcaatgttacagcaatttcactaattggaaataagaacttatgtgggggaatacctcaattg 35754446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 35406099 - 35406224
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataaga 257  Q
    ||||||| |||| ||||||| |||||| | ||||| || ||||||||||||| |||||| |||||||||||| || ||||||||||||  ||||| ||||    
T  35406099 ttgaataatttggacttgtcctttaacaaactctatggtgaggttcccaaaggaggtgtctttagcaatgtttcatcaatttcactaaccggaaacaaga 35406198  T
Q  258 acttatgtgggggaatacctcaattg 283  Q
    || | ||||| |||||||||||||||    
T  35406199 acctttgtggaggaatacctcaattg 35406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 35366223 - 35366492
Alignment:
Q  14 ttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctctttaagaaacctgaatctcttagacctttctaacaaca 113  Q
    |||||| ||||| ||||| || | |||||||||||||||| ||||||||| |||||||| |||||||||    |  |  | |||||| ||||||| ||||    
T  35366223 ttaacaaagcttgtgttgaagaacaactttttccatggaggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataaca 35366322  T
Q  114 acttatctgggacaatccctcatgagctagaaaacctgaaactgttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaagg 213  Q
      || ||  | ||||| ||   ||| |||||||| || | ||| || |||||||||||| ||||||||||| ||||||| || || ||||||  ||||||    
T  35366323 gtttctcaagtacaataccctttgaactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatctctatggtgatgttcccgtagaagg 35366422  T
Q  214 tgtatttagcaatgttacagcaatttcactaattggaaataagaacttatgtgggggaatacctcaattg 283  Q
    ||| |||||||||||| | ||||||||| |||  ||||| || ||| | ||||| ||||||| |||||||    
T  35366423 tgtctttagcaatgtttcggcaatttcattaaccggaaacaaaaacctttgtggaggaatacttcaattg 35366492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 35375913 - 35376038
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataaga 257  Q
    |||||||||||| |||||||||||||| |||| || || |||||||||| |  |||||| || |||||  |  | ||||||||||||| |||||| ||||    
T  35375913 ttgaatactttggacttgtcttttaacaatctttatggtgaggttcccacaagaggtgtcttcagcaagatctccgcaatttcactaactggaaacaaga 35376012  T
Q  258 acttatgtgggggaatacctcaattg 283  Q
    || | ||||| |||||||||||||||    
T  35376013 acctttgtggaggaatacctcaattg 35376038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 35436519 - 35436614
Alignment:
Q  157 gttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaa 252  Q
    ||||||| |||| ||| |||| |||||| ||||||| || |||||||||| | | ||||| ||||||||||| || ||||||||||| || |||||    
T  35436519 gttgaattctttaaacctgtcatttaacaatctctatggtgaggttcccataaatggtgtctttagcaatgtcactgcaatttcacttatgggaaa 35436614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 35423169 - 35423297
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaat---ttcactaattggaaata 254  Q
    |||||||||||| |||||||||||||| |||| || || |||||||||| |  |||||| || ||||| ||  | |||||   ||| |||| |||||| |    
T  35423169 ttgaatactttggacttgtcttttaacaatctttatggtgaggttcccacaagaggtgtcttcagcaacgtctccgcaattaattccctaactggaaaca 35423268  T
Q  255 agaacttatgtgggggaatacctcaattg 283  Q
    ||||| | ||||| |||||||||||||||    
T  35423269 agaacctttgtggaggaatacctcaattg 35423297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 37 - 283
Target Start/End: Complemental strand, 29623928 - 29623682
Alignment:
Q  37 aaactttttccatggagatataccttcgttcttgggctctttaagaaacctgaatctcttagacctttctaacaacaacttatctgggacaatccctcat 136  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||  | || |  |||||||| |||||||||| |  || ||  | |||||||||  |    
T  29623928 aaacttcttgcatggaagtataccttcgttcttgggctctttaagatccttggaaatcttagacatttctaacaatagtttctcaagtacaatccctttt 29623829  T
Q  137 gagctagaaaacctgaaactgttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaa 236  Q
    || |||||||| || | | | ||||| ||||||||||||||||||||| ||||  | || |||||||||   | |||| | ||||||||||| |||||||    
T  29623828 gaactagaaaaactaagatttttgaagactttgaacttgtcttttaacaatctacatggtgaggttcccgtgggaggtatctttagcaatgtcacagcaa 29623729  T
Q  237 tttcactaattggaaataagaacttatgtgggggaatacctcaattg 283  Q
    |||||||||  |||||||||||| | ||||| || ||||||||||||    
T  29623728 tttcactaaccggaaataagaacctttgtggagggatacctcaattg 29623682  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 283
Target Start/End: Complemental strand, 10410675 - 10410532
Alignment:
Q  140 ctagaaaacctgaaactgttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaattt 239  Q
    ||||||||||| | | | ||||||| ||||||||||||||||||| ||||||| || |||||||||| |  |||||| ||| |||||||  |||||||||    
T  10410675 ctagaaaacctaacatttttgaataatttgaacttgtcttttaacaatctctatggtgaggttcccacaagaggtgtctttggcaatgtctcagcaattt 10410576  T
Q  240 cactaattggaaataagaacttatgtgggggaatacctcaattg 283  Q
    |||||| |||||| |||||| | ||||| |||||||||| ||||    
T  10410575 cactaactggaaacaagaacctttgtggaggaatacctcgattg 10410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 283
Target Start/End: Complemental strand, 10416370 - 10416245
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataaga 257  Q
    |||||||||||| |||||||||||||| |||| || || |||||||||| |  |||||| |||||||| ||  ||||||||||||||| |||||| ||||    
T  10416370 ttgaatactttggacttgtcttttaacaatctatatggtgaggttcccacaagaggtgtctttagcaaagtctcagcaatttcactaactggaaacaaga 10416271  T
Q  258 acttatgtgggggaatacctcaattg 283  Q
    || | ||||| |||||||||||||||    
T  10416270 acctttgtggaggaatacctcaattg 10416245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 10421376 - 10421132
Alignment:
Q  38 aactttttccatggagatataccttcgttcttgggctctttaagaaacctgaatctcttagacctttctaacaacaacttatctgggacaatccctcatg 137  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||   ||  |  | |||||| | ||||| ||||   | ||  | ||||| ||  |||    
T  10421376 aactttttccatggagttataccttcattcttgggttctttaagatctctagaaatattagacatgtctaataacagtctctcaagtacaataccctatg 10421277  T
Q  138 agctagaaaacctgaaactgttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaat 237  Q
    | |||||||| || | ||| || |||||||||||  ||||||||||| ||||||| || || ||||| | |||| |||| |||||||||||| | |||||    
T  10421276 aactagaaaatctcacacttttaaatactttgaatctgtcttttaacaatctctatggtgatgttcc-atagaacgtgtctttagcaatgtttcggcaat 10421178  T
Q  238 ttcactaattggaaataagaacttatgtgggggaatacctcaattg 283  Q
    |||| |||  ||||| || ||| | ||||| |||||||||||||||    
T  10421177 ttcattaaccggaaacaaaaacctttgtggaggaatacctcaattg 10421132  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10416530 - 10416456
Alignment:
Q  1 ttcttgcttgaccttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctc 75  Q
    ||||||||| || || ||||| |||| ||||| ||||||||| || ||||||| |||||||| ||||||||||||    
T  10416530 ttcttgcttaacattgacagaactttggttgggggaaaacttctttcatggagctatacctttgttcttgggctc 10416456  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 30662529 - 30662654
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataaga 257  Q
    ||||||| |||  |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |||||  ||||| ||||    
T  30662529 ttgaatagtttagacttgtcttttaacaatctctatggcgaggttccaaaaggaggtgtatttagcaatgtttcagcaattttactaaccggaaacaaga 30662628  T
Q  258 acttatgtgggggaatacctcaattg 283  Q
    || | ||||| |||||| ||| ||||    
T  30662629 acctttgtggaggaatatctccattg 30662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 283
Target Start/End: Original strand, 30634813 - 30634925
Alignment:
Q  171 acttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataagaacttatgtggggg 270  Q
    |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |||||  ||||| |||||| | ||||| ||    
T  30634813 acttgtcttttaacaatctctatggcgaggttccaaaaggaggtgtatttagcaatgtttcagcaattttactaaccggaaacaagaacctttgtggagg 30634912  T
Q  271 aatacctcaattg 283  Q
    |||| ||| ||||    
T  30634913 aatatctccattg 30634925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 30671209 - 30671334
Alignment:
Q  158 ttgaatactttgaacttgtcttttaacgatctctacggcgaggttcccaaagaaggtgtatttagcaatgttacagcaatttcactaattggaaataaga 257  Q
    ||||||| |||  |||||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||| ||||||||| |||||  ||||| ||||    
T  30671209 ttgaatagtttagacttgtcttttaacaatctctatggcgagtttccaaaaggaggtgtatttagcaatgtttcagcaattttactaacaggaaacaaga 30671308  T
Q  258 acttatgtgggggaatacctcaattg 283  Q
    || | ||||| |||||| ||| ||||    
T  30671309 acctttgtggaggaatatctccattg 30671334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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