View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_30 (Length: 256)

Name: NF10111_low_30
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_30
NF10111_low_30
[»] chr4 (10 HSPs)
chr4 (69-142)||(13651860-13651933)
chr4 (69-142)||(13659985-13660058)
chr4 (69-142)||(13643476-13643549)
chr4 (69-142)||(13646296-13646369)
chr4 (69-142)||(13663827-13663900)
chr4 (69-142)||(13649063-13649136)
chr4 (224-256)||(45097172-45097204)
chr4 (108-137)||(13642182-13642211)
chr4 (224-256)||(20747437-20747469)
chr4 (224-256)||(45742813-45742845)
[»] chr5 (6 HSPs)
chr5 (224-256)||(3497538-3497570)
chr5 (224-256)||(16153262-16153294)
chr5 (225-256)||(16127526-16127557)
chr5 (224-256)||(9020692-9020724)
chr5 (224-256)||(16127257-16127289)
chr5 (224-256)||(31657683-31657715)
[»] chr1 (8 HSPs)
chr1 (224-256)||(41855480-41855512)
chr1 (224-256)||(47069055-47069087)
chr1 (225-256)||(15810971-15811002)
chr1 (224-256)||(9202243-9202275)
chr1 (224-256)||(11741395-11741427)
chr1 (224-256)||(35984400-35984432)
chr1 (224-256)||(37951956-37951988)
chr1 (224-256)||(39497431-39497463)
[»] chr3 (14 HSPs)
chr3 (225-256)||(20862195-20862226)
chr3 (226-256)||(36098966-36098996)
chr3 (226-256)||(53361594-53361624)
chr3 (224-256)||(7181348-7181380)
chr3 (224-256)||(12050399-12050431)
chr3 (224-256)||(14428876-14428908)
chr3 (224-256)||(20862464-20862496)
chr3 (224-256)||(22103936-22103968)
chr3 (224-256)||(25149129-25149161)
chr3 (224-256)||(26806113-26806145)
chr3 (224-256)||(37728711-37728743)
chr3 (224-256)||(44543780-44543812)
chr3 (224-256)||(50647682-50647714)
chr3 (224-256)||(51284069-51284101)
[»] chr2 (6 HSPs)
chr2 (225-256)||(34113530-34113561)
chr2 (225-256)||(40680726-40680757)
chr2 (226-256)||(17408034-17408064)
chr2 (224-256)||(11201681-11201713)
chr2 (224-256)||(22182931-22182963)
chr2 (224-256)||(34883855-34883887)
[»] chr8 (8 HSPs)
chr8 (226-256)||(8948358-8948388)
chr8 (224-253)||(4631565-4631594)
chr8 (224-252)||(4631291-4631319)
chr8 (224-256)||(13153926-13153958)
chr8 (224-256)||(28572044-28572076)
chr8 (224-256)||(28579637-28579669)
chr8 (224-256)||(34568488-34568520)
chr8 (224-256)||(44250857-44250889)
[»] chr6 (2 HSPs)
chr6 (226-256)||(1147274-1147304)
chr6 (224-256)||(12144045-12144077)
[»] scaffold0008 (1 HSPs)
scaffold0008 (224-256)||(259129-259161)
[»] chr7 (3 HSPs)
chr7 (224-256)||(32814431-32814463)
chr7 (224-256)||(33858873-33858905)
chr7 (224-256)||(39871620-39871652)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13651860 - 13651933
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13651860 acattgagactcagggtattcataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 13651933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13659985 - 13660058
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13659985 acattgagactcagggtattcataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 13660058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13643476 - 13643549
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13643476 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13643549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13646296 - 13646369
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13646296 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13663827 - 13663900
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13663827 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13663900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 13649063 - 13649136
Alignment:
Q  69 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 142  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  13649063 acattgagactcggggtattcatgatgatgtctttagggacaaattttgtttgcctgattctcacttaccttag 13649136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 45097204 - 45097172
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  45097204 aatactccatccgtccctaattataagaccctt 45097172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 13642182 - 13642211
Alignment:
Q  108 acaaattttgtttgcctaactttcacttcc 137  Q
    ||||||||||||||||||||||||||||||    
T  13642182 acaaattttgtttgcctaactttcacttcc 13642211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 20747469 - 20747437
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  20747469 aatactccctccgtccctaattataagaccctt 20747437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 45742845 - 45742813
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  45742845 aatactccctccgtccctaattataagaccctt 45742813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 3497538 - 3497570
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  3497538 aatactccatccgtccctaattataagaccctt 3497570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 16153294 - 16153262
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  16153294 aatactccatccgtccctaattataagaccctt 16153262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 16127557 - 16127526
Alignment:
Q  225 atactccatccgtccctaattataagaccctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  16127557 atactccatccgtccctaattataagaccctt 16127526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 9020692 - 9020724
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  9020692 aatactccctccgtccctaattataagaccctt 9020724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 16127257 - 16127289
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  16127257 aatactccctccgtccctaattataagaccctt 16127289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 31657683 - 31657715
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||| ||||||||||||||||||||||||||    
T  31657683 aatactacatccgtccctaattataagaccctt 31657715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 41855512 - 41855480
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  41855512 aatactccatccgtccctaattataagaccctt 41855480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 47069087 - 47069055
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||||    
T  47069087 aatactccatccgtccctaattataagaccctt 47069055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 15810971 - 15811002
Alignment:
Q  225 atactccatccgtccctaattataagaccctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  15810971 atactccatccgtccctaattataagaccctt 15811002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 9202243 - 9202275
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  9202243 aatactccctccgtccctaattataagaccctt 9202275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 11741395 - 11741427
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  11741395 aatactccctccgtccctaattataagaccctt 11741427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 35984400 - 35984432
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  35984400 aatactccttccgtccctaattataagaccctt 35984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 37951988 - 37951956
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  37951988 aatactccctccgtccctaattataagaccctt 37951956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 39497431 - 39497463
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  39497431 aatactccctccgtccctaattataagaccctt 39497463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 20862195 - 20862226
Alignment:
Q  225 atactccatccgtccctaattataagaccctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  20862195 atactccatccgtccctaattataagaccctt 20862226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 36098966 - 36098996
Alignment:
Q  226 tactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||    
T  36098966 tactccatccgtccctaattataagaccctt 36098996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 53361594 - 53361624
Alignment:
Q  226 tactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||    
T  53361594 tactccatccgtccctaattataagaccctt 53361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 7181348 - 7181380
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  7181348 aatactccctccgtccctaattataagaccctt 7181380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 12050431 - 12050399
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  12050431 aatactccctccgtccctaattataagaccctt 12050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 14428908 - 14428876
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  14428908 aatactccctccgtccctaattataagaccctt 14428876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 20862496 - 20862464
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  20862496 aatactccctccgtccctaattataagaccctt 20862464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 22103968 - 22103936
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  22103968 aatactccctccgtccctaattataagaccctt 22103936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 25149161 - 25149129
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  25149161 aatactccctccgtccctaattataagaccctt 25149129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 26806113 - 26806145
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  26806113 aatactccctccgtccctaattataagaccctt 26806145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 37728711 - 37728743
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  37728711 aatactccctccgtccctaattataagaccctt 37728743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 44543780 - 44543812
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  44543780 aatactccctccgtccctaattataagaccctt 44543812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 50647682 - 50647714
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  50647682 aatactccctccgtccctaattataagaccctt 50647714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 51284101 - 51284069
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  51284101 aatactccctccgtccctaattataagaccctt 51284069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 34113530 - 34113561
Alignment:
Q  225 atactccatccgtccctaattataagaccctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  34113530 atactccatccgtccctaattataagaccctt 34113561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 40680726 - 40680757
Alignment:
Q  225 atactccatccgtccctaattataagaccctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  40680726 atactccatccgtccctaattataagaccctt 40680757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 17408034 - 17408064
Alignment:
Q  226 tactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||    
T  17408034 tactccatccgtccctaattataagaccctt 17408064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 11201681 - 11201713
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  11201681 aatactccctccgtccctaattataagaccctt 11201713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 22182963 - 22182931
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  22182963 aatactccctccgtccctaattataagaccctt 22182931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 34883887 - 34883855
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  34883887 aatactccctccgtccctaattataagaccctt 34883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 8948388 - 8948358
Alignment:
Q  226 tactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||    
T  8948388 tactccatccgtccctaattataagaccctt 8948358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 4631594 - 4631565
Alignment:
Q  224 aatactccatccgtccctaattataagacc 253  Q
    ||||||||||||||||||||||||||||||    
T  4631594 aatactccatccgtccctaattataagacc 4631565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 4631291 - 4631319
Alignment:
Q  224 aatactccatccgtccctaattataagac 252  Q
    |||||||||||||||||||||||||||||    
T  4631291 aatactccatccgtccctaattataagac 4631319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 13153926 - 13153958
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  13153926 aatactccctccgtccctaattataagaccctt 13153958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 28572044 - 28572076
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  28572044 aatactccctccgtccctaattataagaccctt 28572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 28579637 - 28579669
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  28579637 aatactccctccgtccctaattataagaccctt 28579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 34568488 - 34568520
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  34568488 aatactccctccgtccctaattataagaccctt 34568520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 44250857 - 44250889
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  44250857 aatactccctccgtccctaattataagaccctt 44250889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 1147304 - 1147274
Alignment:
Q  226 tactccatccgtccctaattataagaccctt 256  Q
    |||||||||||||||||||||||||||||||    
T  1147304 tactccatccgtccctaattataagaccctt 1147274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 12144077 - 12144045
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  12144077 aatactccctccgtccctaattataagaccctt 12144045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 259161 - 259129
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  259161 aatactccctccgtccctaattataagaccctt 259129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 32814431 - 32814463
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  32814431 aatactccctccgtccctaattataagaccctt 32814463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 33858905 - 33858873
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  33858905 aatactccctccgtccctaattataagaccctt 33858873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 39871652 - 39871620
Alignment:
Q  224 aatactccatccgtccctaattataagaccctt 256  Q
    |||||||| ||||||||||||||||||||||||    
T  39871652 aatactccctccgtccctaattataagaccctt 39871620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University