View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_31 (Length: 255)
Name: NF10111_low_31
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 15187776 - 15187595
Alignment:
| Q |
11 |
catgtcagatgaatcatccatgttctccaattcattaaacaaagcctccctcaaatccacaaagttcacaacatccaaagaagcaaaagaattttgtagt |
110 |
Q |
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| T |
15187776 |
catgtcagatgaagcatccatgttctccaattcattaaacaaagcctccctcaaatccacaaagttcccaacatccaaagaagcaaaagaattgtgtagt |
15187677 |
T |
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| Q |
111 |
tctagtctcaaatcttctgtacagtaatgtacaatagctgcaatgtttttcattggattgattaactttaatgttatcacaat |
193 |
Q |
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| T |
15187676 |
tctagtctcaaattttctgtacagtactgcacaatagctgcaatg-tcttcattggattgattaactctaatgttatcacaat |
15187595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 33190971 - 33190793
Alignment:
| Q |
14 |
gtcagatgaatcatccatgttctccaattcattaaacaaagcctccctcaaatccacaaagttcacaacatccaaagaagcaaaagaattttgtagttct |
113 |
Q |
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| T |
33190971 |
gtcagatgaagcatctaagttctccaattcctcagacaaagcctcccccaaatccacaagattcccagcatccaaataagcaaatgaatttagtagttct |
33190872 |
T |
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| Q |
114 |
agtctcaaatcttctgtacagtaatgtacaatagctgcaatgtttttcattggattgattaactttaatgttatcacaat |
193 |
Q |
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| T |
33190871 |
aggctcaaattttctgtacattcctgcgccatagctgcaatg-gtttcattggattgattgactccaatggtatcacaat |
33190793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 20636932 - 20636895
Alignment:
| Q |
208 |
ttaaaataaaggctaaagtgcaattttcgccccctatg |
245 |
Q |
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| T |
20636932 |
ttaaaataaaggctaaagtgcacttttcgccccctatg |
20636895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 8527107 - 8527072
Alignment:
| Q |
209 |
taaaataaaggctaaagtgcaattttcgccccctat |
244 |
Q |
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| T |
8527107 |
taaaataaaggctaaagtgcacttttcgccccctat |
8527072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 39332026 - 39331850
Alignment:
| Q |
10 |
gcatgtcagatgaatcatccatgttctccaattcattaaacaaagcctccctcaaatccacaaagttcacaacatccaaagaagcaaaagaattttgtag |
109 |
Q |
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| T |
39332026 |
gcatgtcagatgaagcatctatgttctccggtccctcagacaaagcctcccccaaatccataaggttcacaacatccaaagaagcaaatgaattttg--- |
39331930 |
T |
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| Q |
110 |
ttctagtctcaaatcttctgtacagtaatgtacaatagctgcaatgtttttcattggattgattaactttaatgttatcacaat |
193 |
Q |
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| T |
39331929 |
---taggctcaaattttctctgcaatcctgtgcaatagctgcaatg-tcttcattggattgattaactctaatggtatcacaat |
39331850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 47869966 - 47869931
Alignment:
| Q |
209 |
taaaataaaggctaaagtgcaattttcgccccctat |
244 |
Q |
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| T |
47869966 |
taaaataaaggctaaagtgcaatttttgccccctat |
47869931 |
T |
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