View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_33 (Length: 253)
Name: NF10111_low_33
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 3011124 - 3011180
Alignment:
| Q |
75 |
atcaatgactgaatcgaaccaaactattttgttcttcattagattgtgttggttaga |
131 |
Q |
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| T |
3011124 |
atcaatgaccgaatcgaaccaaactattttgttcttcattagattgtgttggttaga |
3011180 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 3011346 - 3011394
Alignment:
| Q |
193 |
tctataaaccaaatgaaaccgatatattagagcctcaatttggattctc |
241 |
Q |
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| T |
3011346 |
tctataaactaaatgaaactgatatattagagcctcaatttggattctc |
3011394 |
T |
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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 3014788 - 3014836
Alignment:
| Q |
80 |
tgactgaatcgaaccaaactattttgttcttcattagattgtgttggtt |
128 |
Q |
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| T |
3014788 |
tgactcaatcaaaccaaactagtttgttcttcgttagattgtgttggtt |
3014836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 3014901 - 3014953
Alignment:
| Q |
193 |
tctataaaccaaatgaaaccgatatattagagcctcaatttggattctctgct |
245 |
Q |
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| T |
3014901 |
tctataaactaaacaaaaccgatatattagagcccccatttggattctttgct |
3014953 |
T |
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