View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_4 (Length: 544)

Name: NF10111_low_4
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_4
NF10111_low_4
[»] chr7 (7 HSPs)
chr7 (241-534)||(24044835-24045130)
chr7 (1-223)||(24045660-24045883)
chr7 (238-299)||(9107345-9107406)
chr7 (337-373)||(24044726-24044762)
chr7 (240-278)||(36449298-36449336)
chr7 (243-283)||(26386001-26386041)
chr7 (242-278)||(40292870-40292906)
[»] scaffold1613 (1 HSPs)
scaffold1613 (243-299)||(857-913)
[»] chr1 (3 HSPs)
chr1 (243-299)||(38544578-38544634)
chr1 (240-299)||(38548896-38548955)
chr1 (242-278)||(27905622-27905658)
[»] chr4 (1 HSPs)
chr4 (240-299)||(12296360-12296419)
[»] chr5 (1 HSPs)
chr5 (240-278)||(17853891-17853929)
[»] chr2 (2 HSPs)
chr2 (240-278)||(27879973-27880011)
chr2 (240-299)||(20572273-20572331)
[»] chr6 (1 HSPs)
chr6 (242-276)||(34101392-34101426)
[»] chr3 (1 HSPs)
chr3 (242-278)||(46358230-46358266)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 241 - 534
Target Start/End: Complemental strand, 24045130 - 24044835
Alignment:
Q  241 gaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattaatctt 340  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24045130 gaaaaacgatatccataaccactcatcatcactacgcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattagtctt 24045031  T
Q  341 ccaaataaaaatgttaaggactgatttgagtattg-nnnnnnngttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 439  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24045030 ccaaataaaaatgttaaggactgatttgagtattgttttttttgttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 24044931  T
Q  440 gtataaaattaaagatga--ctctaatnnnnnnnngatattgtttaaaacataaatatgcttttaaacacccaaaagtttataaatttatccctttg 534  Q
    ||||| ||||||||||||  |||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24044930 gtatacaattaaagatgactctctaat-aaaaaaagatattgtttaaaacataaatatgcttttaaacaccgaaaagtttataaatttatccctttg 24044835  T

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Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24045883 - 24045660
Alignment:
Q  1 tgttgtaaggtactgaaggaaaagtgattgtcaggtttgtaatggtttgttatactattggtgccaattattttcttcatatctttttgc-tttgtgatt 99  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||| ||| |||| ||||||||||| |||||| |||||||||    
T  24045883 tgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttatcttcttcatatcattttgcttttgtgatt 24045784  T
Q  100 gtggattccaatggttctgttttgccacggtggannnnnnnnnnnnnnnnncttgaatgaaaaggtagtcttaacaattttaaaactaatttatgccttt 199  Q
    ||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24045783 gtggattccaatggttctgttttgccacggtggattttttgtctgttttttcttgaatgaaaaggtagtcttaacaattttaaaactaatttatgccttt 24045684  T
Q  200 ttaagtattattgcgtaggtcctt 223  Q
    ||||||||||||| ||||||||||    
T  24045683 ttaagtattattgtgtaggtcctt 24045660  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 9107406 - 9107345
Alignment:
Q  238 attgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    |||| |||||||||||||||||||| |||| |||||||||||| |||  |||| ||||||||    
T  9107406 attggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctcta 9107345  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 24044726 - 24044762
Alignment:
Q  337 tcttccaaataaaaatgttaaggactgatttgagtat 373  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24044726 tcttccaaataaaaatgttaaggactgatgtgagtat 24044762  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 36449336 - 36449298
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactca 278  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  36449336 tgaaaaacgatatccataaccactcatcgtcactactca 36449298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 26386001 - 26386041
Alignment:
Q  243 aaaacgatatccataaccactcatcaccactactcatctca 283  Q
    |||| |||||||||||||||||||| |||||||||| ||||    
T  26386001 aaaatgatatccataaccactcatcgccactactcacctca 26386041  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 40292870 - 40292906
Alignment:
Q  242 aaaaacgatatccataaccactcatcaccactactca 278  Q
    |||||||||||||||||||||||||| || |||||||    
T  40292870 aaaaacgatatccataaccactcatcgcctctactca 40292906  T

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Target: scaffold1613 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 857 - 913
Alignment:
Q  243 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  857 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 913  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 38544578 - 38544634
Alignment:
Q  243 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  38544578 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 38544634  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 38548896 - 38548955
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    ||||||||||||| ||||||||| ||||  ||||||||||| ||| ||||||||||||||    
T  38548896 tgaaaaacgatattcataaccacccatcgtcactactcatcccaaagtaacacccctcta 38548955  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 27905658 - 27905622
Alignment:
Q  242 aaaaacgatatccataaccactcatcaccactactca 278  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  27905658 aaaaacgatatccataatcactcatcgccactactca 27905622  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 12296419 - 12296360
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||  |||||||||||||    
T  12296419 tgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctcta 12296360  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 17853891 - 17853929
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactca 278  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  17853891 tgaaaaacgatatccataaccacccatcaccactactca 17853929  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 27879973 - 27880011
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactca 278  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  27879973 tgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 20572331 - 20572273
Alignment:
Q  240 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 299  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||   ||||||||||||    
T  20572331 tgaaaaacgatatccataaccac-catcgccactactcacctcaaaagaacacccctcta 20572273  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 34101426 - 34101392
Alignment:
Q  242 aaaaacgatatccataaccactcatcaccactact 276  Q
    |||||||||||||||||||||||||| ||||||||    
T  34101426 aaaaacgatatccataaccactcatcgccactact 34101392  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 46358230 - 46358266
Alignment:
Q  242 aaaaacgatatccataaccactcatcaccactactca 278  Q
    |||||||| |||||||||||| |||||||||||||||    
T  46358230 aaaaacgaaatccataaccacgcatcaccactactca 46358266  T

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