View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_42 (Length: 250)
Name: NF10111_low_42
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15851460 - 15851700
Alignment:
| Q |
1 |
agtaactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgataggaacatgcacataatt |
100 |
Q |
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| T |
15851460 |
agtaactccattagatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgataggaacatgcacataatt |
15851559 |
T |
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| Q |
101 |
aggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15851560 |
aggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccat |
15851659 |
T |
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| Q |
201 |
ccaaaagggatatacgaaacttggccttttgttgcctttgc |
241 |
Q |
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| T |
15851660 |
ccaaaagggatatacgaaacttggccttttgtggcctttgc |
15851700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15858360 - 15858597
Alignment:
| Q |
1 |
agtaactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgataggaacatgcacataatt |
100 |
Q |
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| T |
15858360 |
agtaactccattggatgtgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtggtaggaacatgcacataatt |
15858459 |
T |
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| Q |
101 |
aggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15858460 |
tggagaaagttcgaatgagaaattctgcagcaacaatgatactgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccat |
15858559 |
T |
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| Q |
201 |
ccaaaagggatatacgaaacttggccttttgttgcctt |
238 |
Q |
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| T |
15858560 |
ccaaaagggaaataagaaacttgtccttttgttgcctt |
15858597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 15844229 - 15844462
Alignment:
| Q |
5 |
actccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgataggaacatgcacataattagga |
104 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| || |||||| |||| ||||||||||| |
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| T |
15844229 |
actccaatggacatgctcttacagtttatgcaaaatgatgattgccccattctttggcatcaaagtaagcaccatggtaggaagatgcgcataattagga |
15844328 |
T |
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| Q |
105 |
gaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaa |
204 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15844329 |
gaaagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctaggaccccatccaa |
15844428 |
T |
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| Q |
205 |
aagggatatacgaaacttggccttttgttgcctt |
238 |
Q |
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| |||| ||| |||||||| |||||||||||||| |
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| T |
15844429 |
aggggaaataagaaacttgtccttttgttgcctt |
15844462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 15865430 - 15865668
Alignment:
| Q |
3 |
taactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgataggaacatgcacataattag |
102 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||||||| | |
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| T |
15865430 |
taactccattggatgtgctcttacagtttatgcaaaatgatgcttgcaccattttttggcgtcaaagtaagcacagtggtgggaacatgcacataatttg |
15865529 |
T |
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| Q |
103 |
gagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatcc |
202 |
Q |
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|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15865530 |
gagaaagttcgaatgagaaattctgcagcagcaatgaaattgctatctttgcttctagtaaggcaaagttttgtccaagacaaattctaggaccccatcc |
15865629 |
T |
|
| Q |
203 |
aaaagggatatacgaaacttggccttttgttgcctttgc |
241 |
Q |
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|||||||| ||| ||||||| |||||||| |||||||| |
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| T |
15865630 |
aaaagggaaataagaaacttttccttttgtagcctttgc |
15865668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 30484894 - 30484791
Alignment:
| Q |
102 |
ggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatc |
201 |
Q |
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||||||||||| |||||||||| ||||| | || || |||||| ||||||||||| || | || |||||||||||||| ||||||||||||||||| || |
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| T |
30484894 |
ggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattctaggaccccctc |
30484795 |
T |
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| Q |
202 |
caaa |
205 |
Q |
| |
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|||| |
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| T |
30484794 |
caaa |
30484791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 30404661 - 30404567
Alignment:
| Q |
147 |
atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgc |
241 |
Q |
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||||||||||||||||| ||||||||||| || | |||| ||||||||| | ||||| |||| | | ||||||||||||||||||| ||||| |
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| T |
30404661 |
atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgc |
30404567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30395898 - 30395840
Alignment:
| Q |
147 |
atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaa |
205 |
Q |
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||||||||||| | || || |||||||||||||| |||||||| |||||||||||||| |
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| T |
30395898 |
atctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaa |
30395840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 30431471 - 30431413
Alignment:
| Q |
140 |
tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacccc |
198 |
Q |
| |
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|||||| ||||||||||| || | || |||||||||||||| |||||||||||||||| |
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| T |
30431471 |
tattgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccc |
30431413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 30425438 - 30425373
Alignment:
| Q |
140 |
tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaa |
205 |
Q |
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| T |
30425438 |
tattgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaa |
30425373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 11019577 - 11019490
Alignment:
| Q |
153 |
gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttg |
240 |
Q |
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||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| | || ||||||| ||| ||||||||||||| |
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| T |
11019577 |
gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttg |
11019490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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