View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_44 (Length: 249)
Name: NF10111_low_44
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24825258 - 24825497
Alignment:
| Q |
1 |
agttcaaatttcatttctggtgaaattccttcttcaatttcttcaatgaagaatttgaagagtattgtttttgctgataatcttttcaatggaaatattc |
100 |
Q |
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| T |
24825258 |
agttcaaatttcatttctggtgaaattccttcttcaatttcttcaatgaagaatttgaagagtattgttgttgctgataatcttttcaatggaaatattc |
24825357 |
T |
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| Q |
101 |
cagatcttaagagtttaacttctcttgaagaggttaattttgatggaaataagttaggtccacaatttccttcaattggaaaaaatcttgtgaaaattat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24825358 |
cagatcttaagagtttaacctctcttgaagaggttaattttgatggaaataagttaggtccacaatttccttcaattggaaaaaatcttgtgaaaattat |
24825457 |
T |
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| Q |
201 |
tttgagcaaaaattctataagatcacaaattcctcctatg |
240 |
Q |
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| T |
24825458 |
tttgagcaaaaattctataagatcacaaattccttctatg |
24825497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 16216418 - 16216314
Alignment:
| Q |
38 |
tttcttcaatgaagaatttgaagagtattgtttttgctgataatcttttcaatggaaatattccagatcttaagagtttaacttctcttgaagaggttaa |
137 |
Q |
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| T |
16216418 |
tttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagaggttaa |
16216319 |
T |
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| Q |
138 |
ttttg |
142 |
Q |
| |
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||||| |
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| T |
16216318 |
ttttg |
16216314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 16963688 - 16963573
Alignment:
| Q |
23 |
aaattccttcttcaatttcttcaatgaagaatttgaagagtattgtttttgctgataatcttttcaatggaaatattccagatcttaagagtttaacttc |
122 |
Q |
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||||||| || ||| ||||||||||||| | | | |||||| ||||||| ||||||||| |||||||||||| | |||| |||| || || ||||| || |
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| T |
16963688 |
aaattccatcatcagtttcttcaatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
16963589 |
T |
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| Q |
123 |
tcttgaagaggttaat |
138 |
Q |
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|||||||||| ||||| |
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| T |
16963588 |
tcttgaagagattaat |
16963573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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