View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_45 (Length: 249)
Name: NF10111_low_45
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32844235 - 32844006
Alignment:
| Q |
1 |
tatgcaaaacgcaaagaataatgcatttctactaccatgagtatcttctctacaacacaattacttttttaataaaaattgtaaagattactcaagtcgg |
100 |
Q |
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| T |
32844235 |
tatgcaaaacgcaaagaatagtgcatttctactaccatgagtatcttctctacaatgcaattacttttttaataaaaattgtaaaaattactcaagttgg |
32844136 |
T |
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| Q |
101 |
aaacttgcaaataaaatatgagatacgagtaaaatgatatgctaaacaaagcaccacattcacatacaactacattaattcaatcgcccttttnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32844135 |
caacttgcaaataaaatatgagatacgactaaaatgttatgctaaacaaagcaccacattcacatacaactacattaattcaattgcccttttaaaaaaa |
32844036 |
T |
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| Q |
201 |
ctaaattattcaattatatgctcaacgaaa |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32844035 |
ctaaattattcaattatatgctcaacgaaa |
32844006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 29756551 - 29756446
Alignment:
| Q |
85 |
agattactcaagtcggaaacttgcaaataaaatatgagatacgagtaaaatgatatgctaaacaaagcaccacattcacatacaactacattaattcaat |
184 |
Q |
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|||||||||||||| | |||||||||| |||||| ||||| | |||| ||| |||||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
29756551 |
agattactcaagtcagcaacttgcaaacaaaatacaagataagggtaacatgttatgctcaatgaagcaccacattcacatacatctacattaattcaat |
29756452 |
T |
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| Q |
185 |
cgccct |
190 |
Q |
| |
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||||| |
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| T |
29756451 |
tgccct |
29756446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 27742815 - 27742738
Alignment:
| Q |
41 |
gtatcttctctacaacacaattactttttta-ataaaaattgtaaagattactcaagtcggaaacttgcaaataaaat |
117 |
Q |
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|||||||||||| || |||||||||||||| | |||||||| | |||||||||||||||| |||||||||| ||||| |
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| T |
27742815 |
gtatcttctctagaatgcaattacttttttacaaaaaaattgcatagattactcaagtcggcaacttgcaaacaaaat |
27742738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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