View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_46 (Length: 249)

Name: NF10111_low_46
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_46
NF10111_low_46
[»] chr6 (10 HSPs)
chr6 (11-240)||(4388915-4389136)
chr6 (11-240)||(4376220-4376449)
chr6 (11-240)||(4383794-4384023)
chr6 (14-106)||(5726524-5726616)
chr6 (50-240)||(4369102-4369292)
chr6 (49-239)||(4364701-4364891)
chr6 (11-82)||(4415555-4415626)
chr6 (11-82)||(4359286-4359357)
chr6 (191-240)||(4415397-4415446)
chr6 (195-240)||(5726390-5726435)
[»] chr8 (1 HSPs)
chr8 (11-240)||(3595727-3595945)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 4388915 - 4389136
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4388915 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtc 4389014  T
Q  111 cctttccaaaggcgctccaccaaactgatggaacctcattaccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatc 210  Q
    ||||||| ||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4389015 cctttccgaaggcgct--------ctgatggaacctcattaccagccgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatc 4389106  T
Q  211 aagttgaatttcaatcttcgctctttcttc 240  Q
    ||||||||||||||||||||||||||||||    
T  4389107 aagttgaatttcaatcttcgctctttcttc 4389136  T

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Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 4376220 - 4376449
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtc 110  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4376220 catcttaccatctcaaatgcactccgattatgatcacccccataagaactgcatgtcaagcttaatacacgacatgcaaatttttggagctccggtagtc 4376319  T
Q  111 cctttccaaaggcgctccaccaaactgatggaacctcattaccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatc 210  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| |||| |||||||||| ||||    
T  4376320 cctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacggctacaggatgagtcatatcgtttgcccatttatcgaaatcatc 4376419  T
Q  211 aagttgaatttcaatcttcgctctttcttc 240  Q
    |||||||||||||||||| ||||| |||||    
T  4376420 aagttgaatttcaatcttagctctctcttc 4376449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 4383794 - 4384023
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtc 110  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4383794 catcttaccatctcgaaggcactccgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctccggtagtc 4383893  T
Q  111 cctttccaaaggcgctccaccaaactgatggaacctcattaccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatc 210  Q
    ||| ||||||||| ||||||||||||||||||| |||| ||| ||||||| ||| |||| |||| |||||||||| ||||||||||||||||||| ||||    
T  4383894 cctctccaaaggctctccaccaaactgatggaatctcaatacgagctgtccttatggcttcagggtgacccatatagttcgcccgtttatcgaaatcatc 4383993  T
Q  211 aagttgaatttcaatcttcgctctttcttc 240  Q
     |||||||||||||| || |||||||||||    
T  4383994 gagttgaatttcaattttagctctttcttc 4384023  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 5726616 - 5726524
Alignment:
Q  14 cttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggt 106  Q
    ||||||||||| || ||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||   |||||||| ||||||||||||    
T  5726616 cttaccatctcgaaggcacttttattacgctcacccccataagaactgcatgccaagcataatacacgaattgcaaatttctggagctctggt 5726524  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 4369102 - 4369292
Alignment:
Q  50 ccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtccctttccaaaggcgctccaccaaactgatggaacctcat 149  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||||||||||||| |||| | | | || |  | |||||||| || ||||| |||      
T  4369102 ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcca 4369201  T
Q  150 taccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatcaagttgaatttcaatcttcgctctttcttc 240  Q
    || |||| || |||| |||||  |||||||| |  |  || ||| ||||||| ||| |||||||||||||||||||||| | |||||||||    
T  4369202 tatcagccgtaattatggctattggatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttc 4369292  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 4364701 - 4364891
Alignment:
Q  49 cccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtccctttccaaaggcgctccaccaaactgatggaacctca 148  Q
    |||||||||||||| ||||||||||||||||||    |||||||| || ||||||||| |||| | | | || |    |||||||| || ||||| |||     
T  4364701 cccataagaactgcttgtcaagcttaatacacggattgcaaatttctgtagctctggtggtccatctactaacgatgcccaccaaattggtggaatctcc 4364800  T
Q  149 ttaccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatcaagttgaatttcaatcttcgctctttctt 239  Q
     || ||||||| ||||||||||  |||||||| |  |  || ||| || |||||||| |||||||||||||||||||||||| ||||||||    
T  4364801 atatcagctgtaattacggctattggatgaccgaattgattagcctgtctatcgaaatcatcaagttgaatttcaatcttcgatctttctt 4364891  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 4415626 - 4415555
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacga 82  Q
    ||||||||||||||  | |||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||    
T  4415626 catcttaccatctcgtaggcactctgattatgctcacccccataagaactacatgtcaagctcaatatacga 4415555  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4359286 - 4359357
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacga 82  Q
    |||||||||||||| || ||  || ||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  4359286 catcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagcataatacacga 4359357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 4415446 - 4415397
Alignment:
Q  191 gcccgtttatcgaaagcatcaagttgaatttcaatcttcgctctttcttc 240  Q
    ||||||||||||||| |||||||| |||| |||||||| |||||||||||    
T  4415446 gcccgtttatcgaaatcatcaagtcgaatctcaatcttagctctttcttc 4415397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 5726435 - 5726390
Alignment:
Q  195 gtttatcgaaagcatcaagttgaatttcaatcttcgctctttcttc 240  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||    
T  5726435 gtttatcgaaatcctcaagttgaatttcaatcttagctctttcttc 5726390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 3595945 - 3595727
Alignment:
Q  11 catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgacacgcaaatttttggagctctggtagtc 110  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3595945 catcttaccatctcaaaggcactctgattactctcacccccataagaacttcatgtcaagcttaatacacgaca--caaatttttggagctctggtagtc 3595848  T
Q  111 cctttccaaaggcgctccaccaaactgatggaacctcattaccagctgtcattacggctacaggatgacccatatcgttcgcccgtttatcgaaagcatc 210  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||         |||| |||| || ||||||||||||||||| |||||||||| ||||    
T  3595847 cctttccaaagggactccaccaaactgatggaacttcattaccag---------cggcaacagaataacccatatcgttcgcccatttatcgaaatcatc 3595757  T
Q  211 aagttgaatttcaatcttcgctctttcttc 240  Q
    |||||||||||||||||| |||||||||||    
T  3595756 aagttgaatttcaatcttagctctttcttc 3595727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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