View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_48 (Length: 246)
Name: NF10111_low_48
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 11591900 - 11592102
Alignment:
| Q |
11 |
atggacatcatgggtggtagacctacctaatatactaactaactagtaacatttgtctatttgaaaaactacaaataaatcaaatcctagacaaaattct |
110 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591900 |
atggccataatgggtggtagacctacctaatatactaactaactaataacatttgtctatttgaaaaactacaaataaatcaaatcctagacaaaattct |
11591999 |
T |
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| Q |
111 |
taatagactatctatcaaatgtccacaatcttgttatcaaggctcaaagttgaaaagatttcacattaatgcttaccaaagttatccacagtaaagcaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592000 |
taatagactatctatcaaatgtccacaatcttgttatcaaggctcaaagttgaaaagatttcacattaatgcttaccaaagttatccacagtaaagcaca |
11592099 |
T |
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| Q |
211 |
cta |
213 |
Q |
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||| |
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| T |
11592100 |
cta |
11592102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 11646218 - 11646018
Alignment:
| Q |
11 |
atggacatcatgggtggtagacctacctaatatactaactaactagtaacatttgtctatttgaaaaactacaaataaatcaaatcctagacaaaattct |
110 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646218 |
atggccataatgggtggtagacctacctaatatactaactaactagtaacatttttctatttgaaaaactacaaataaatcaaatcctagacaaaattct |
11646119 |
T |
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| Q |
111 |
taatagactatctatcaaatgtccacaatcttgttatcaaggctcaaagttgaaaagatttcacattaatgcttaccaaagttatccacagtaaagcaca |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
11646118 |
taa--gactatctatcaaatgtccacaatcttgttatcaaggctcaaagttgaaaagatttcatattaatgcttaccaaagttatccacattaaagcaca |
11646021 |
T |
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| Q |
211 |
cta |
213 |
Q |
| |
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||| |
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| T |
11646020 |
cta |
11646018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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