View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10111_low_5 (Length: 535)
Name: NF10111_low_5
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 23231315 - 23230797
Alignment:
| Q |
1 |
aggtcgcaacaagatgaggaatttatcgaagtccagatgagaaacgcctatccataatggtaaaaatagggctcttgctagtggaacaactgacaaagag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23231315 |
aggtcacaacaagatgaggaatttatcgaagtccagatgagaaacacctatccataatggtaaaaatagggctcttgctagtggaacaactgacaaagtg |
23231216 |
T |
|
| Q |
101 |
actcgaagaaaacacatatttgtttgactgaaccgtagatgaaatgtcgggaatagaatgaagcattccccagaaaaggtagaagcaacaagaaagcagt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
23231215 |
cctcgaagaaaccacatatttgtttgactgaaccgtagatgaaatgtcgggaatagaatgaagcattccccagaaaaggtagaagcaaccataaagcagt |
23231116 |
T |
|
| Q |
201 |
ctcaacctcttaaaggctgacttaataaccgaagccaaatatacaaattggttatagaacgtagtgttggtcaacaaggcatgccccaaggacacccacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23231115 |
ctcaacctcttaaaggctgacttaataaccgaagccaaatatacaaattggttatagaacgtagtgttggtcaacaaggcatgccccaaggacacctacc |
23231016 |
T |
|
| Q |
301 |
cccttcccaacattgatgatttaccagacaactcttcatgtttgaaatttctatctttcttggacgtatattctggctataactagatacacatggattc |
400 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23231015 |
cccttcctaacattgatgatttactagacaactcttcatgtttgaaatttctatctttcttggacgtatagtctggctataactagatacacatggattc |
23230916 |
T |
|
| Q |
401 |
acatgatcaagacaagacaaccttcacgaccgatttaagaaacttcttctacaaggtactgcccttcggtataacaaacacatggacaacatgccaaagg |
500 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23230915 |
acatgatcaagacaacacaaccttcttgaccgatttaagaaacttattctacaaggtactgcccttcggtataacaaacacatggacaacatgccaaagg |
23230816 |
T |
|
| Q |
501 |
atgaactaaatgtttaaat |
519 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
23230815 |
atgaactaaaagtttaaat |
23230797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University