View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_50 (Length: 243)
Name: NF10111_low_50
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_50 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 31139415 - 31139191
Alignment:
| Q |
19 |
gtgatcagcatttaataacgttaacaatccaccagagcatatttgagacggcaaatggccaacaaaatcattttcggacacaataaaggaaaaccaattg |
118 |
Q |
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| T |
31139415 |
gtgatcagcatttaataacgttaacaatccaccagagcatatttgagacggcaaatggccaacaaaatcatttttggacacaataaaggaaaaccaattg |
31139316 |
T |
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| Q |
119 |
gttatgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatag |
218 |
Q |
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| T |
31139315 |
gttatgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatag |
31139216 |
T |
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| Q |
219 |
ttcctgtgagattgttttcttggac |
243 |
Q |
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| T |
31139215 |
ttcctgtgagattgttttcttggac |
31139191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 31057603 - 31057379
Alignment:
| Q |
19 |
gtgatcagcatttaataacgttaacaatccaccagagcatatttgagacggcaaatggccaacaaaatcattttcggacacaataaaggaaaaccaattg |
118 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
31057603 |
gtgatcagcatttaataaccttaacgatccaccagagcatatttgagacggcaaatgtccaacaaaatcattttcggacacaacaaaggaaatccaattg |
31057504 |
T |
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| Q |
119 |
gttatgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatag |
218 |
Q |
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| T |
31057503 |
gttatgttataaagaccatttggaattctaccatgaagtttattggtagctacttcaaaaacagtgagccacttcaaatttccaattgaagctggaatag |
31057404 |
T |
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| Q |
219 |
ttcctgtgagattgttttcttggac |
243 |
Q |
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|||| |||||||||||||||||||| |
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| T |
31057403 |
ttccagtgagattgttttcttggac |
31057379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 31101998 - 31101814
Alignment:
| Q |
59 |
atttgagacggcaaatggccaacaaaatcattttcggacacaataaaggaaaaccaattggttatgttataaagtccatttggaattctaccatgaagtt |
158 |
Q |
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| T |
31101998 |
atttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtt |
31101899 |
T |
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| Q |
159 |
tattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatagttcctgtgagattgttttcttggac |
243 |
Q |
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| T |
31101898 |
tgttggaagctacttcaaagacaatgagctgcttcaaatttccgattgtagctggaatagttcctgtgagattgtttacttggac |
31101814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 31183127 - 31182907
Alignment:
| Q |
22 |
atcagcatttaataacgttaacaatccaccagagcatatttgagacggcaaatggccaacaaaatcattttcggacacaataaaggaaaaccaattggtt |
121 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||| |
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| T |
31183127 |
atcagcatttaagaacgttaattttccaccagaacatatttgagacggcaaatggccaacaaaatcattctcagacacaagaaaggaataccaattggtg |
31183028 |
T |
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| Q |
122 |
atgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatagttc |
221 |
Q |
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|||||| ||| |||||||||||||||||||||||||||| || || |||||||||| ||||| | ||||||||||||||||||| |||||| |||| |
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| T |
31183027 |
ttgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaaagacactgagcagcttcaaatttccaattgtagctggaattgttc |
31182928 |
T |
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| Q |
222 |
ctgtgagattgttttcttgga |
242 |
Q |
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| T |
31182927 |
cagtgagattgttttcttgga |
31182907 |
T |
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