View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_53 (Length: 241)

Name: NF10111_low_53
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_53
NF10111_low_53
[»] chr1 (4 HSPs)
chr1 (17-241)||(3010669-3010902)
chr1 (37-165)||(3019875-3020014)
chr1 (37-93)||(3021881-3021937)
chr1 (169-233)||(3020138-3020202)
[»] chr2 (1 HSPs)
chr2 (37-93)||(27139947-27140003)
[»] chr7 (1 HSPs)
chr7 (37-87)||(23580817-23580867)
[»] chr4 (1 HSPs)
chr4 (37-86)||(18912266-18912315)
[»] chr8 (1 HSPs)
chr8 (37-93)||(14601308-14601364)
[»] chr3 (1 HSPs)
chr3 (37-93)||(44658379-44658435)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 3010669 - 3010902
Alignment:
Q  17 atttacccagttcggacaagtttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagcttttcgata---------agatatcac 107  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||         |||||||||    
T  3010669 atttacccagttcggacaagtttcaagtcgctcaaattcacaatatatcctaatagaaaacaataaagaaagctttacgatactttctataagatatcac 3010768  T
Q  108 tgctcaaggtgtttgtgacgtatttcccaaagaccatcaacccgaaaattatcaaagacctacgaaaaatcgcgcagtgattttcctagatcgtgccacg 207  Q
    | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3010769 tactcaaggtgtttgtgaagtatttcccaaagaccatcaacccaaaaattatcaaagacctacgaaaaatcgcgcagtgattttcctaaatcgtgccacg 3010868  T
Q  208 attgaagctcatacacagtatagtatattgaacc 241  Q
    ||||||||||||||||||||||||||||||||||    
T  3010869 attgaagctcatacacagtatagtatattgaacc 3010902  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 3019875 - 3020014
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagcttttcgata-----------agatatcactgctcaaggtgtttgtga 125  Q
    ||||||||| |||||||||| |||  ||||| |||||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||    
T  3019875 tttcaagtcactcaaacccaaaatgaatcctgatagaaaacaataaagaaagtttttcgatatttcaataatgagatatcactactcaaggtgtttgtga 3019974  T
Q  126 cgtatttcccaaagaccatcaacccgaaaattatcaaaga 165  Q
     || || ||| |||||||| || || ||||||||||||||    
T  3019975 agtgttccccgaagaccataaatcctaaaattatcaaaga 3020014  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 3021881 - 3021937
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 93  Q
    ||||||||| ||||||||||||||  || |||||||||||||||||| |||| ||||    
T  3021881 tttcaagtccctcaaacccacaatgaatgctaatagaaaacaataaaaaaagttttt 3021937  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 3020138 - 3020202
Alignment:
Q  169 acgaaaaatcgcgcagtgattttcctagatcgtgccacgattgaagctcatacacagtatagtat 233  Q
    ||||||||||||||  |||||| | |||||||||| ||||||| ||||||| |||| ||| ||||    
T  3020138 acgaaaaatcgcgctatgatttgcttagatcgtgctacgattggagctcatgcacaatattgtat 3020202  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 27139947 - 27140003
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 93  Q
    ||||||||| ||  |||||| |||  |||||||||||||||||||||||||||||||    
T  27139947 tttcaagtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagctttt 27140003  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 23580867 - 23580817
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaa 87  Q
    ||||||||| ||||||||||||||  ||| ||| |||||||||||||||||    
T  23580867 tttcaagtcactcaaacccacaatggatcataagagaaaacaataaagaaa 23580817  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 18912315 - 18912266
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaa 86  Q
    ||||||||| ||||||||||||||  ||||||| |||||| |||||||||    
T  18912315 tttcaagtcactcaaacccacaatgaatcctaagagaaaataataaagaa 18912266  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 14601308 - 14601364
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 93  Q
    ||||||||| ||||||| ||| ||  ||||||  |||||||||||||||||||||||    
T  14601308 tttcaagtcactcaaacgcacgatgaatcctatgagaaaacaataaagaaagctttt 14601364  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 44658435 - 44658379
Alignment:
Q  37 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 93  Q
    ||||||||| ||||||||||||||  |||| || |||||| ||||||||||| ||||    
T  44658435 tttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttt 44658379  T

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